Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g1406 | ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATCGCGAACAGAATCAAGGCAAAAGGGTTACAGAAACTCAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCATCAGCGCCAGATGCAGATCTTTGGCCAAAATCCTCATCGTATTGTTGAGGGCTACTCTGAAGAATTTGAGAGTTCTTTCATGGAGCATCTTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTTGTCTATAATGAATACATTAACGACAGACATCACATTCATATGAATTCAACGCAGTGGGCTACTCTTACTGAGTTTGTAAAGCACTTGGGTCGAACTGGGCAATGTAAGGTAGAGGAGACGCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACACTTTTTAAAGAGAGAATGAAAAATAAGAGAATGCGTGCAGATTTAGCTGAGGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTGTGGCTTCTGTATCTGCTGAGCCTTTGGAGACTGAACAAACGAGAGAGTTGAAATTGGATACTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCATCAAAATTGAAGGAGAAATGTGAGAGTTCCATGGTGGTTTTTGATGAGGATGAGACACATGAGACTGCCAAGGGGAAACCTGTAGAGAATTCCAAAAACAAGACGGCTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTACTGGCTTTGCGAGGGAATAATTGTAAAGATCATGAGCAAGGATTTGGCTGAGAAGGGATTCTATAAACAGAAGGGAGTTGTGCGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAAGATTGTAAATGGGGCGTATCGTGGATCAAATGCTAGGTTGTTGGGCGTTGATACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAAGGGTGTGTATGATGGCAGGGTACTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAA | 1188 | 42.17 | MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHLKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPVASVSAEPLETEQTRELKLDTGVKLGFALGTSSKLKEKCESSMVVFDEDETHETAKGKPVENSKNKTAGGGLSALEALMREEEMKKEKLNRKDYWLCEGIIVKIMSKDLAEKGFYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 25434786 | 25435973 | - | ClG42_01g0140600.10 | Clacu01g1406 | 240790 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g1406 | 395 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 394 | IPR037321 | GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER) | |
| Clacu01g1406 | 395 | Pfam | Domain of Kin17 curved DNA-binding protein | 52 | 177 | IPR019447 | - | |
| Clacu01g1406 | 395 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 66 | IPR036236 | - | |
| Clacu01g1406 | 395 | FunFam | DNA/RNA-binding protein kin17-like | 284 | 337 | - | - | |
| Clacu01g1406 | 395 | SMART | Kin17_mid_2 | 52 | 178 | IPR019447 | - | |
| Clacu01g1406 | 395 | Gene3D | - | 60 | 160 | IPR038254 | - | |
| Clacu01g1406 | 395 | CDD | KOW_KIN17 | 340 | 393 | IPR041995 | - | |
| Clacu01g1406 | 395 | Gene3D | - | 284 | 337 | - | - | |
| Clacu01g1406 | 395 | Coils | Coil | 257 | 277 | - | - | |
| Clacu01g1406 | 395 | FunFam | DNA/RNA-binding protein KIN17, putative | 61 | 160 | - | - | |
| Clacu01g1406 | 395 | Coils | Coil | 154 | 183 | - | - | |
| Clacu01g1406 | 395 | FunFam | DNA/RNA-binding protein KIN17, putative | 338 | 394 | - | - | |
| Clacu01g1406 | 395 | Pfam | KN17 SH3-like C-terminal domain | 276 | 329 | IPR041330 | - | |
| Clacu01g1406 | 395 | Gene3D | - | 338 | 394 | IPR014722 | - | |
| Clacu01g1406 | 395 | MobiDBLite | consensus disorder prediction | 235 | 254 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1406 | Clacu-Chr1:25434786 | Clacu05g1504 | Clacu-Chr5:18454146 | 1.20E-183 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g1406 | K13102 | - | csv:101216499 | 717.227 |