Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1450 ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA 267 45.32 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQIMAK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26410914 26411458 - ClG42_01g0145000.10 Clacu01g1450 240834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1450 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Clacu01g1450 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Clacu01g1450 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Clacu01g1450 88 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Clacu01g1450 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 86 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1450 Clacu-Chr1:26410914 Clacu02g2221 Clacu-Chr2:35302805 1.10E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1450 K02219 - rcu:8275256 157.532