Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1468 ATGTCTCGCCGAGGCAGTGGTGGGGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAGCCGTCTCCGGCTATATCTCGCGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTAGTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCTACGGGAGCATCTTCTTCATCCTCCTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATTGAGGCACAAGTGGGGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGGACAAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTATACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTTAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCCGGTGAACTGGGTAATGGTGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTATGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTGGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGAATTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACACACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCGGTCTGTAAAAAGTCTGGGAGCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACCGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCACGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCCGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAAATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTGCATTGCTTTTGAAAGAAATCTGCTGGAGCAAGCTCAAGACAGTCATGAAATCATGAGTCTTTTTGTAAATGTTGATTTGATTAAGTCAATTCAAAGTCTTGGTGCCTTCTATCTTCACCTTCGTGAATTTTATGTGAATCTTCCCAGCCAGTTTGGAAATTCGGATAGCTCTGAGTTCTGCAAGGTTCATGTTAGAGATCATGGTTTCATTTTTTCTGCTGCACTAATAAACAAGCACATTGACTGTGTCAAGTTCAACTATGGTGTGTTTTTCATAACTCAAATCAAGAGGAACATCGAATCTCAAGCAGCTAAAGTTTATTTGTGTTTTTCTCGTCTTATCTGTGGTATTCTTCTTGCTAAAAAACTCGACATTTTGACGGATTTAGATGTTATTGGTCTCATTCCTTCCGCAATCACTTTCAGCTATCGACTATATCAAGGCAAGCATGTGCCAGACCTGATTCATTCAAAAGCTTTTGCTGTTGAAAAGCTTGGTTTGTTACTTCAAACGCATCTTGCCCGGAAAGCTGAAGTTGATGATATGCTGCACTTGTTTAGAAGATCTCCTGACGACTTGGATCATGGTCCAGATGCTGGTGGTGATGTTAATGATTGA 3519 43.31 MSRRGSGGGGGGRGSGGRGGQPSPAISRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPSPVASPPPPQTSTGASSSSSSGTATHSQPEVSRIEAQVGKMTLTPQKVPPSSSKDLAVAKRPGYGTIGDKVVVRANHFLVHVADKDLYHYDVSIIPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGRQRDAPQETIQVLDVVFRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRIYVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVHTAHANQIDGVLRDIHSRSVKSLGAQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMCIAFERNLLEQAQDSHEIMSLFVNVDLIKSIQSLGAFYLHLREFYVNLPSQFGNSDSSEFCKVHVRDHGFIFSAALINKHIDCVKFNYGVFFITQIKRNIESQAAKVYLCFSRLICGILLAKKLDILTDLDVIGLIPSAITFSYRLYQGKHVPDLIHSKAFAVEKLGLLLQTHLARKAEVDDMLHLFRRSPDDLDHGPDAGGDVND 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26759086 26773164 - ClG42_01g0146800.10 Clacu01g1468 240852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1468 1172 MobiDBLite consensus disorder prediction 71 92 - -
Clacu01g1468 1172 FunFam protein argonaute 10-like 686 969 - -
Clacu01g1468 1172 FunFam Argonaute 10 506 680 - -
Clacu01g1468 1172 SMART PAZ_2_a_3 331 464 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu01g1468 1172 SMART Piwi_a_2 618 934 IPR003165 GO:0003676(InterPro)
Clacu01g1468 1172 ProSiteProfiles PAZ domain profile. 330 442 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu01g1468 1172 SMART DUF1785_2 276 328 IPR014811 -
Clacu01g1468 1172 Pfam Argonaute linker 2 domain 468 514 IPR032472 -
Clacu01g1468 1172 SUPERFAMILY Ribonuclease H-like 613 935 IPR012337 -
Clacu01g1468 1172 CDD Piwi_ago-like 486 933 IPR045246 -
Clacu01g1468 1172 Pfam N-terminal domain of argonaute 131 266 IPR032474 -
Clacu01g1468 1172 Pfam PAZ domain 352 459 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu01g1468 1172 ProSiteProfiles Piwi domain profile. 618 934 IPR003165 GO:0003676(InterPro)
Clacu01g1468 1172 Pfam Piwi domain 619 933 IPR003165 GO:0003676(InterPro)
Clacu01g1468 1172 Gene3D - 686 968 IPR036397 GO:0003676(InterPro)
Clacu01g1468 1172 Pfam Mid domain of argonaute 525 602 IPR032473 -
Clacu01g1468 1172 CDD PAZ_argonaute_like 328 441 - -
Clacu01g1468 1172 MobiDBLite consensus disorder prediction 1 92 - -
Clacu01g1468 1172 Pfam Argonaute linker 1 domain 278 327 IPR014811 -
Clacu01g1468 1172 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 122 955 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Clacu01g1468 1172 Gene3D - 506 681 - -
Clacu01g1468 1172 Gene3D paz domain 323 446 - -
Clacu01g1468 1172 SUPERFAMILY PAZ domain 325 482 IPR036085 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1468 Clacu-Chr1:26759086 Clacu04g1318 Clacu-Chr4:27076494 2.80E-300 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1468 K11593 - csv:116403995 1633.23