Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1482 ATGGTCGGCCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAACCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCCCATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGCCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATTGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAGAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 49.41 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAASVDGRSAMLDANAVGCLVEILKEKDIDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF 540
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 26902538 26904160 - ClG42_01g0148200.10 Clacu01g1482 240866
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1482 540 Gene3D - 220 400 IPR011989 -
Clacu01g1482 540 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Clacu01g1482 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 SMART Ubox_2 33 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g1482 540 Gene3D - 401 501 IPR011989 -
Clacu01g1482 540 Pfam U-box domain 31 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g1482 540 MobiDBLite consensus disorder prediction 187 202 - -
Clacu01g1482 540 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 PANTHER U BOX DOMAIN-CONTAINING 17 499 - -
Clacu01g1482 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Clacu01g1482 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Clacu01g1482 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g1482 540 SUPERFAMILY RING/U-box 16 108 - -
Clacu01g1482 540 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1482 Clacu-Chr1:26902538 Clacu03g0161 Clacu-Chr3:1727454 1.70E-10 dispersed
Clacu01g1482 Clacu-Chr1:26902538 Clacu06g1777 Clacu-Chr6:28307531 1.20E-88 wgd
Clacu01g1482 Clacu-Chr1:26902538 Clacu09g1914 Clacu-Chr9:34034465 3.50E-80 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1482 - - - 0.0