Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g1482 | ATGGTCGGCCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAACCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCCCATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGCCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATTGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAGAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA | 1623 | 49.41 | MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAASVDGRSAMLDANAVGCLVEILKEKDIDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 26902538 | 26904160 | - | ClG42_01g0148200.10 | Clacu01g1482 | 240866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g1482 | 540 | Gene3D | - | 220 | 400 | IPR011989 | - | |
Clacu01g1482 | 540 | SUPERFAMILY | ARM repeat | 227 | 497 | IPR016024 | - | |
Clacu01g1482 | 540 | SMART | arm_5 | 334 | 374 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | SMART | arm_5 | 414 | 457 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | SMART | arm_5 | 375 | 413 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | SMART | arm_5 | 293 | 333 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | SMART | Ubox_2 | 33 | 97 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu01g1482 | 540 | Gene3D | - | 401 | 501 | IPR011989 | - | |
Clacu01g1482 | 540 | Pfam | U-box domain | 31 | 98 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu01g1482 | 540 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
Clacu01g1482 | 540 | Pfam | Armadillo/beta-catenin-like repeat | 295 | 332 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | PANTHER | U BOX DOMAIN-CONTAINING | 17 | 499 | - | - | |
Clacu01g1482 | 540 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 304 | 341 | IPR000225 | GO:0005515(InterPro) | |
Clacu01g1482 | 540 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 106 | IPR013083 | - | |
Clacu01g1482 | 540 | ProSiteProfiles | U-box domain profile. | 29 | 104 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu01g1482 | 540 | SUPERFAMILY | RING/U-box | 16 | 108 | - | - | |
Clacu01g1482 | 540 | MobiDBLite | consensus disorder prediction | 187 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1482 | Clacu-Chr1:26902538 | Clacu03g0161 | Clacu-Chr3:1727454 | 1.70E-10 | dispersed | |
Clacu01g1482 | Clacu-Chr1:26902538 | Clacu06g1777 | Clacu-Chr6:28307531 | 1.20E-88 | wgd | |
Clacu01g1482 | Clacu-Chr1:26902538 | Clacu09g1914 | Clacu-Chr9:34034465 | 3.50E-80 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g1482 | - | - | - | 0.0 |