Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1485 ATGTTTCAAAGAATCATTAATCGAAGAGTAAACAAGACGAAGACGAAGGTTGTTTCTCTCCATGTTTCCCCACCGAAACCTACCTTCTTCCTTTCATGTCGCAACTTCACTTCCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCGGATATCGCCAATCTTGTCCTCGAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTTGTGGACAAGGTTCTCAAGCGCCTTTGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTTGACCATGTCATCGACATCGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTAGTGGCTCGAATGCGATCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCTGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCAATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACAATCTGTTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGACGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGAAAGGTTTTCGACGAGATGGTTGGCGAAGGGGTTCTTCCTTCAACAGCAACTTACAATGCTATGATTCAGGTTTTGTGTAAGAAAGACAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTCATGTGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGCGGGTAATATGGAAAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTCGCTATTCGGTATTTTTGTGATGCTGGTGACATAGAAAAGGGGTTGAATATGTTTGAGAAGATGGGGCAGGGGAGCTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGCTGCTGGGAAGCTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTTTCAATCGAGTTCTCAATGGTCTTTTGCTGACGGGTAATCAAGTGCCTTCATCTGATCTTGTTGTGAAGCTGGTCACCTCAGAACCCGTTCCATTCTTCCTGAAGATGTCAAACAAGATTTTGAACTACACCTGTGGATCCGGAAGTGTTTTAATGGTTTATGGATGGACAAGACAAGATAATGTGGCAACTATCAGAAGCAGAGCAGTCGATTGCCGAAGTCTTCACATCAAACATATCTGCGGCGGCGGCGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTGTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACTCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATCGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGAGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG 3027 42.91 MFQRIINRRVNKTKTKVVSLHVSPPKPTFFLSCRNFTSQSSSALDTATAAADIANLVLESDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHVIDIAGRMRDYKTVWALVARMRSRRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGHVPNLTTYNVVIRGLCHAGNMEKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKKSEDLVAAGKLLLEMIDRGFLPRKFTFNRVLNGLLLTGNQVPSSDLVVKLVTSEPVPFFLKMSNKILNYTCGSGSVLMVYGWTRQDNVATIRSRAVDCRSLHIKHICGGGDDDDFMAALPSSSAVPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQIRDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26943156 26954217 - ClG42_01g0148500.10 Clacu01g1485 240869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1485 1008 SMART E2F_TDP_2 579 644 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu01g1485 1008 SMART E2F_TDP_2 711 791 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu01g1485 1008 SUPERFAMILY Winged helix DNA-binding domain 713 792 IPR036390 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Clacu01g1485 1008 SUPERFAMILY Winged helix DNA-binding domain 578 642 IPR036390 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Clacu01g1485 1008 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 31 436 IPR050667 -
Clacu01g1485 1008 Pfam PPR repeat 160 178 IPR002885 -
Clacu01g1485 1008 Pfam PPR repeat 218 248 IPR002885 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Clacu01g1485 1008 Gene3D Tetratricopeptide repeat domain 384 496 IPR011990 GO:0005515(InterPro)
Clacu01g1485 1008 Gene3D Tetratricopeptide repeat domain 207 313 IPR011990 GO:0005515(InterPro)
Clacu01g1485 1008 Gene3D Tetratricopeptide repeat domain 91 206 IPR011990 GO:0005515(InterPro)
Clacu01g1485 1008 FunFam E2F transcription factor 8 574 646 - -
Clacu01g1485 1008 Gene3D Tetratricopeptide repeat domain 314 383 IPR011990 GO:0005515(InterPro)
Clacu01g1485 1008 Pfam E2F/DP family winged-helix DNA-binding domain 712 791 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu01g1485 1008 Pfam E2F/DP family winged-helix DNA-binding domain 580 644 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu01g1485 1008 Gene3D - 574 647 IPR036388 -
Clacu01g1485 1008 Gene3D - 706 793 IPR036388 -
Clacu01g1485 1008 SUPERFAMILY HCP-like 220 379 - -
Clacu01g1485 1008 Pfam PPR repeat family 320 369 IPR002885 -
Clacu01g1485 1008 Pfam PPR repeat family 394 437 IPR002885 -
Clacu01g1485 1008 Pfam PPR repeat family 250 297 IPR002885 -
Clacu01g1485 1008 FunFam E2F transcription factor-like E2FE 706 793 - -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 254 287 IPR002885 -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 324 356 IPR002885 -
Clacu01g1485 1008 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Clacu01g1485 1008 MobiDBLite consensus disorder prediction 687 705 - -
Clacu01g1485 1008 MobiDBLite consensus disorder prediction 662 709 - -
Clacu01g1485 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1485 Clacu-Chr1:26943156 Clacu02g2289 Clacu-Chr2:35927389 4.60E-09 dispersed
Clacu04g0242 Clacu-Chr4:7522607 Clacu01g1485 Clacu-Chr1:26943156 6.10E-10 transposed
Clacu01g1485 Clacu-Chr1:26943156 Clacu06g1773 Clacu-Chr6:28275372 2.40E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47019 PF02319 E2F_TDP 9.30E-20 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1485 - - - 0.0