Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1487 ATGGAGGAATCGAAAGCAGCGGCGTACTACGATGAGCTCACTCGTAAAGGAGAAGGGGCAGCAAGGTTCAAGCGAGGTCTCGGTTTTTCCGCCTCCGACTCCAACAGTGACGTGGTCTCCGCGTCCAAGGGCTCCGCTCTGCCTTCGTCGTCTTCCTTCCTCAGTTCTTTTGTTAAAGCCTCAAGCCCTTCCAAGGCCTCCGAGTTCGAAAAGCAATCGCAGCTCGAGGCCATTCAGAACAAGCTCAAGAAGAAGAAACCAAGCTCTCCCGGTGGAGAAGAGAGGCGCCCCAGGGCTTTGGAGAGAGATCGTCGGAAATCGAGCCCTAGAAGAAGGTCTTTGAGTAAAGAGAGGGAGAGACATTCGCATTCGAGGAGGCGGAGTTCGAGTAGAGATAGGGAGAGACATTCGAGGCGGCGAAGTAGGAGTCGGGATAGGTATGGGGATAAGTATAGGGATAGGGATAGAGAGAGGAGGAGGAGGAGAAGTAGGTCTAGGAGCGATTCAGATAGGGACCGGCGGCGTCGACGGAGTAGAAGCTTGTCGCTAGACAGGAAGAGGTCGGAGGACAATGGAAGTAAGGGAGGCGGAAAACAGAAAGACCGTAAAGTTGAAAGACAGAAAACTGAAGGTGTTAATTATTCAAGATTGATTGAAGGATATGACATGATGTCTCCAGCTGAAAGAGTCAAAGCCAAGATGAAACTACAACTTGCTGAAACTGCCAGAATGGATGATACAAAAGGCACAGGCCCAGGTTGGGAAAGGTTTGAGTTCGACAAGGATGCTCCACTTGATGATGAAGAAATTGAAGCTGCAGAAGATGATGCAACCTTAGTCAAGCATATTGGACAAAGCTTTCGATTCTCTGCAATTGAGGCTAGGAAAGAGGAGCAAATTAAAGCTGCTCATGACGAGGCCATGTTTGGAGCACCAGTGGGTCAATTATTAAGTACAACCGATGATGAGGTCGAGCTCGAGAATGAAAAGTCAAAGGAGTCATGTGATAGCGATATGGCAACAAATCTATTAAGTGAGAAGGTAGTACCAGAAAACTGGCACTTTGATTGGCCTATTATTTTACTCGCAGTGGGCTCCGTCTGTCTCCAGGTAATTAAAGATACCCAGAACGTCAGCCGCGTCTCAGCCTCTACGATCCGTTTCCTTCGCCGATATTCATCAATGGCTCCTTCTTCCAACCTTAGTCGATGGCTCAGGCCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGACCAAGGAGAATAGAGCCGCTGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATGCTGAACATTTTCTGAGGAAATTCGTGCGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAGCTTCTTCACTGACCCAAGTCGAAACTAA 1467 48.88 MEESKAAAYYDELTRKGEGAARFKRGLGFSASDSNSDVVSASKGSALPSSSSFLSSFVKASSPSKASEFEKQSQLEAIQNKLKKKKPSSPGGEERRPRALERDRRKSSPRRRSLSKERERHSHSRRRSSSRDRERHSRRRSRSRDRYGDKYRDRDRERRRRRSRSRSDSDRDRRRRRSRSLSLDRKRSEDNGSKGGGKQKDRKVERQKTEGVNYSRLIEGYDMMSPAERVKAKMKLQLAETARMDDTKGTGPGWERFEFDKDAPLDDEEIEAAEDDATLVKHIGQSFRFSAIEARKEEQIKAAHDEAMFGAPVGQLLSTTDDEVELENEKSKESCDSDMATNLLSEKVVPENWHFDWPIILLAVGSVCLQVIKDTQNVSRVSASTIRFLRRYSSMAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINSFFTDPSRN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26961110 26970091 - ClG42_01g0148700.10 Clacu01g1487 240871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1487 488 MobiDBLite consensus disorder prediction 29 76 - -
Clacu01g1487 488 MobiDBLite consensus disorder prediction 144 211 - -
Clacu01g1487 488 MobiDBLite consensus disorder prediction 116 143 - -
Clacu01g1487 488 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 406 473 IPR010530 -
Clacu01g1487 488 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 1 352 IPR034604 GO:0000380(PANTHER)|GO:0000380(InterPro)|GO:0000398(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Clacu01g1487 488 MobiDBLite consensus disorder prediction 27 211 - -
Clacu01g1487 488 MobiDBLite consensus disorder prediction 77 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1487 Clacu-Chr1:26961110 Clacu08g1887 Clacu-Chr8:28127231 1.50E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g679 Blo04g00748 . . . . . . . Cmo13g00938 . . . . . . Cpe20g00219 . . . . . . . . . . . . . . . Cone2ag0879 . . . Lsi02g00343 Csa01g00815 Chy12g01302 Cme12g01726 . . . Bda14g00827 . Bpe15g00624 Bma03g00801 . . . . Cma13g00911 . Car13g00751 . . . Bhi08g01444 . . . . . . Cla01g01401 Cam01g1463 Cec01g1505 . Clacu01g1487 Cmu01g1382 Cre01g1299 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012736 1 3 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 28