Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1508 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTTTTGAAGGGAGCTGTGGATTTGGCTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTCAAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGGTTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCTAATGGAGGACACCCTGACTGGCAAGATTTTGTTGGTATCATTACCCTACTTATCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGTAGGAAATGCTGCGGCTGCTCTCATGGCTCGTTTTGCTCCCAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGCGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCTGATGCACGTCTTCTAGATGGGGATCCACTAAAAATTGACCAGTTTGCGCTTACAAGCGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTGCTCTAGTTCTACTTGCAAGCAAGGAGAGATTGAAGTTTTGGTCATTGCTACTAGTGTCTACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAGTGGGACACTTCCAAAAGGTCTTAACAGCCATAGGGAATTTCTGCATATGTTCCATTGTTGTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCGTGAGTATCGCCCTAGAATTCATAACCTCCTTGTGCTACTAATTGGAGGAATTTCTATAGCCATGCCTACAGTTCTATCTGGTGTCATCATAAAGAGAATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTCTGCAGTGATAAGACAGGAACCCTGACTTTTAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTTGTTCTAATGGTTGCTAGAGCATCAAGAATTGAGAAGCAAGATGCTATTGATACTGCCATTGTTGGAATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTCCTACCTTTCAATCCTACTGATAAGCGAACAGCTTTGACTTATATCGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGCGCTCCAGAACAGTCAGAGATAGAGAGAAAAGTTCATCCAGTGATTGATAAATTTGCTGGACGAGGTTTGCGTTCACTTGTTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTCTGTTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGAAGAGCTTTAAATCTCGGCATAAATGTGAAAATGATTACTGGAGATCAGCTGGCTATAGGCAAGGAAACGGGACAGCACAAATACGAGATTTTAAAACACTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCTTGCACTTAAAAAAGCAGACATAGATATAACTGTTGCAGATGCAACTGATGCTGCTCGAAGTGCTTCTAATATTGTTCTTACTGAACCTGGTCTCCGTGTTATCATCAATTCTGTTTTGACTAGTAGAGAAATATTTCAGAGGATGAAGAATTACACGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTTATTATCATTGCTATCCTTAATTATGGTACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTATTGGCATTGTACTCGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCCTATAAAACTAACTTTTTCCCTCGAGTCTTTAGAGTACCAACCCTTGAAAAAACAGATCATGATGATTTCCGGAAGCTAGCATTAGCTATATATCTTCAAGTGAGCACCATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTATGTCGAGCATCCTGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAATTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGCTTTGCTATTCGATATGCTTTGAGTGGGAAGACTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACGAGACAAAAGGATTTCGGTAAGGAACAACGTGAGTTGCAATGGGCTCACGCACAAAGAACGCTGCATGGTTTGCAACCGCCTGATACTAAGATGTTCACTGAGCGAACTCATTTCATAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATATGTTGCAAACATCGTCTTTGATTGA 2451 42.31 MGEKPEVLEAVLKGAVDLAAEERLKIFGHNKLKEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGHPDWQDFVGIITLLIINSTISFIEENNVGNAAAALMARFAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQFALTSESLPVTKGPGDGVCSSSTCKQGEIEVLVIATSVYTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIVVGMVIEIIVMYPIQDREYRPRIHNLLVLLIGGISIAMPTVLSGVIIKRMTAIEEMAGMDVLCSDKTGTLTFNKLTVDKNLVEVFSKGIDADTVVLMVARASRIEKQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQSEIERKVHPVIDKFAGRGLRSLVVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGINVKMITGDQLAIGKETGQHKYEILKHLQAMKHICGMTGDGVNDALALKKADIDITVADATDAARSASNIVLTEPGLRVIINSVLTSREIFQRMKNYTLGFMLLALIWKFDFPPFMVIIIAILNYGTIMTISKDRVKPSPLPDSWKLAEIFTIGIVLGSYLAMMTVIFFWASYKTNFFPRVFRVPTLEKTDHDDFRKLALAIYLQVSTISQALIFVTRSRSWSYVEHPGVFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGFAIRYALSGKTWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFIELNHMAEEAKRRAEIARYVANIVFD 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27186895 27191926 + ClG42_01g0150800.10 Clacu01g1508 240892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1508 816 Pfam Cation transporter/ATPase, N-terminus 19 61 IPR004014 -
Clacu01g1508 816 Gene3D - 110 194 - -
Clacu01g1508 816 FunFam Plasma membrane ATPase 481 549 - -
Clacu01g1508 816 PANTHER CALCIUM-TRANSPORTING ATPASE 13 482 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Clacu01g1508 816 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 743 IPR023298 -
Clacu01g1508 816 SMART Cation_ATPase_N_a_2 1 67 IPR004014 -
Clacu01g1508 816 Gene3D - 482 538 IPR023214 -
Clacu01g1508 816 Gene3D - 291 481 IPR023214 -
Clacu01g1508 816 NCBIfam HAD-IC family P-type ATPase 79 313 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu01g1508 816 NCBIfam HAD-IC family P-type ATPase 360 574 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu01g1508 816 Gene3D - 539 721 - -
Clacu01g1508 816 PRINTS H+-transporting ATPase (proton pump) signature 402 420 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu01g1508 816 PRINTS H+-transporting ATPase (proton pump) signature 666 687 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu01g1508 816 Gene3D - 306 445 IPR023299 GO:0000166(InterPro)
Clacu01g1508 816 Pfam haloacid dehalogenase-like hydrolase 290 515 - -
Clacu01g1508 816 SUPERFAMILY HAD-like 287 554 IPR036412 -
Clacu01g1508 816 Pfam E1-E2 ATPase 109 275 - -
Clacu01g1508 816 PRINTS P-type cation-transporting ATPase superfamily signature 157 171 - -
Clacu01g1508 816 PRINTS P-type cation-transporting ATPase superfamily signature 524 536 - -
Clacu01g1508 816 PRINTS P-type cation-transporting ATPase superfamily signature 501 520 - -
Clacu01g1508 816 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Clacu01g1508 816 Gene3D - 72 290 - -
Clacu01g1508 816 Gene3D - 788 811 - -
Clacu01g1508 816 ProSitePatterns E1-E2 ATPases phosphorylation site. 296 302 IPR018303 -
Clacu01g1508 816 FunFam Plasma membrane ATPase 306 445 - -
Clacu01g1508 816 FunFam Plasma membrane ATPase 110 194 - -
Clacu01g1508 816 SUPERFAMILY Calcium ATPase, transduction domain A 110 207 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1508 Clacu-Chr1:27186895 Clacu11g1388 Clacu-Chr11:24399862 0.00E+00 dispersed
Clacu01g1508 Clacu-Chr1:27186895 Clacu06g1749 Clacu-Chr6:28064530 0.00E+00 wgd
Clacu01g1508 Clacu-Chr1:27186895 Clacu09g1885 Clacu-Chr9:33678719 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1508 K01535 - csv:101214920 1368.99