Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1517 ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGCTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCAATTGTGCACTTGGGTTCGGTCATGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCAAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCTCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCCAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG 1323 42.25 MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLANCALGFGHGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27251539 27253221 + ClG42_01g0151700.10 Clacu01g1517 240901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1517 440 Pfam Pectate lyase 178 358 IPR002022 -
Clacu01g1517 440 PANTHER PECTATE LYASE 18-RELATED 18 437 IPR045032 GO:0030570(InterPro)
Clacu01g1517 440 Gene3D - 92 433 IPR012334 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Clacu01g1517 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Clacu01g1517 440 SMART amb_all 167 364 IPR002022 -
Clacu01g1517 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
Clacu01g1517 440 SUPERFAMILY Pectin lyase-like 82 435 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1517 Clacu-Chr1:27251539 Clacu10g1478 Clacu-Chr10:27896404 2.70E-179 dispersed
Clacu01g1517 Clacu-Chr1:27251539 Clacu05g2657 Clacu-Chr5:34212655 1.20E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1517 K01728 - csv:101218812 812.757