Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1521 ATGACCGTACGAGTTCCTTCCAGCGTGACCCGCATGCAAAGCCTCTCCAACTTCCACGTGCACAACCCGACATCCTCCCGCCACTCTCACGCGCGTCGTGGCAATGGTAGAATAATAGGGGTTTTTGTTGAAGTGGGCACATTGAGTGAGGTGGAGCTTAACGTATCAGCAATGGGGAAGTCGCCAGGGAAATGGATCAAGACCATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTTTCTGCCAAGGCATCAGAAAATACTACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGGGTGCCAAAAATTACTAACAATGAAGCAGCTAATGTGTTGCATGAAAGATCAGTACCAATTCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGCTTGAAGTGCAGAACAAATGTAGATTAGTGCAGATACAGGATCAACCATTAGTAGATCCTGCTGGCGTAAGTCTTTCTACACGAATGGCAAAGCTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGACACTGAAGCTGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCTCCCGAGTCTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTCCTACTGCAAACAATGACAGTGCTGCTGTCCAATCATCTACAGAATTTGAGAAACCCAAACGGAATTTTAGGAAAGTCTCTAGTCATTCAGCCGCCGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTCGAAAAGGTCAAGCGTAGTCTGAGAAAGGTCCATAACCCCGTCCTTGAGAATCCTGCCCAAACAGAAGTTGATGCTGAGAAGCCCAAGGAAAGTTTGGAGAAGGCTTCTAATGGTCTAAGCCGTGACGTTTTGGCGAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACAAATCCCCTCCAGCCTGATTTGGAAACAACTCCTGAGCCGTTACCAACTAAAGAGATGGTTAATGTACCTATCAGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAGCGGTGACAAGGATAAAAGCATTGCTGGAGATGAGGCTGCTGTGGAGACTCAGCCTCTGACAGAGAGCTACACTAAAGATGAAATCAACCCATTACCAAATGGGGAATCGAACCACAAGGAAGATCATTCTAACAACGAGAATCCGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGATGCAAAACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCTAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAAAAATAACAACCTCAACCGACGTCATTCTTTACCGTCACCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTTGTTCAAGCAGGTGGCAAAGGAGGAAACAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGAAATTCAAATCTTCCGGTTTCGATATCAATGGCGAATACACCAATTGAAGCCGCAACCTTCTGGACCCAAGCAAATGCTCTCCTAAGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTGATTTCCTTCCCGTTCATCCTCTGTTTATTGCTCGTTCTACTTCAAAAAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCAGTGAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCAATATTGCAAATGCCTGCTCCTCATTTTCGTGCTGTGCGAACAGATTCTTTTCCATATGAAGACTTGCCAAATGAATCATGCAGGGAATCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTTTTTGTCTTGGAACTCTTCTGATGTTCAATATGGTGCATCGCTTAACGTTTTGGGATCAGCATCGAGGCCTAGAACAAACAATTATCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAGCGTCAGTGTGTGACAGGCTCGACATTGTCAATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCATGTGTTCAAGGTCTACAATTGTGGTGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACAAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTCAATTTCTTAAATTCTGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATTGGCCGTTCTTCGAATGTTCTGTTGCGGGTTCCACGCTTGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAAGCACAGAGATGCTCTTTGAGTTTGTCAAAGAAATGCCGAAACCTGCAACAAAGATCAGGCTGGATTTCTCTTCTCTACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCGTATGCTTATTTTCTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGTTGTTTGGTTCAGTTATAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTAGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGTTTCAACATATATATGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCATCATTCCCACGTGGCTGGATCATGGTTATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACCGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATATTGTATCGATAAAGTTTTATCATCGGGAAGTTGGAAGTGTGCATTATTTTTCCTCCAAAGACATGACAAAAAACCTCCATCTCAGAATCCTGGTTTTGAAAGGCAAGGTTCAAAAGTTTTGGTTCAAACTGATAAACCTGATGTCAGACAAGAGAGGGAGAAGGTCGAAAAGTTGCTAAAGGAAGGAGATCCAAGTTATGCCATCGTTTCTGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAACCCTGAGCAGTTTGCAGTTAGAGGACTATCTCTTGCTCTGGCTCGAGGAGAATGCTTTGGGCTGCTAGGTCCAAATGGTGCGGGAAAGACCTCCTTTATCAATATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTGGTTGAAGGTCTGGACATAAGCACTGAGATGAATGGCATATACGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGTGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTCTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTTAAGCGTGCAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGCGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGACATGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAGATATACCACTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAAGTTCGGATTGCTGATGTGTTTCAAGCAGTTGAAAATGCCAAAAGCAGGTTTACAGTGTTGGCTTGGGGTTTGGCTGACACAACTTTAGAGGACGTCTTTATCAAAGTTGCTAATGGCGCCGAGTCTTCAGATATGCTTTCTTGA 4827 42.53 MTVRVPSSVTRMQSLSNFHVHNPTSSRHSHARRGNGRIIGVFVEVGTLSEVELNVSAMGKSPGKWIKTILFGKKSSKSNLSKSRERNGNEKEVLVSAKASENTTVISHPVASHPTPNTIDTNEGVPKITNNEAANVLHERSVPIPGNQDAEIQGSTCQDAPSDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEVQNKCRLVQIQDQPLVDPAGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDTEAENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSTGQTGEAHTVRSKRTRRVPTANNDSAAVQSSTEFEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAEKPKESLEKASNGLSRDVLARGTSNSSEKMKKEAISTNPLQPDLETTPEPLPTKEMVNVPISDPVVDSQPLIESGDKDKSIAGDEAAVETQPLTESYTKDEINPLPNGESNHKEDHSNNENPKSGRKSSTPAKQERVENGMQNSPTLPSYMAATESAKAKLRAQGSPRFGQDSEKNNNLNRRHSLPSPTNAKISSQSPRTQRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRRNSNLPVSISMANTPIEAATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNNELDKPKNNCGCVCVDTNGDGVCEKVCGLEYSTLIQAVSCPIPSPPQWPPILQMPAPHFRAVRTDSFPYEDLPNESCRESMSCPVTMLFTGNNRSLGNILAASMVPSFLSWNSSDVQYGASLNVLGSASRPRTNNYLDPAFFSNLPLYYMQRQCVTGSTLSIPVSIFSLTKTQDIACVQGLQLWCNSSSEVNDEIYRGYKNGNSEGKINEILSGFNFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLASNGYLKFLLGASTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTISAVYMFCFVLFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEVSTYICVFGTGLLGGFLFQFFIEDPSFPRGWIMVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYCIDKVLSSGSWKCALFFLQRHDKKPPSQNPGFERQGSKVLVQTDKPDVRQEREKVEKLLKEGDPSYAIVSDHLKKVYPGKDGNPEQFAVRGLSLALARGECFGLLGPNGAGKTSFINMMIGLIKPTAGTALVEGLDISTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGHVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEDVFIKVANGAESSDMLS 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27293703 27310259 + ClG42_01g0152100.10 Clacu01g1521 240905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1521 1608 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1286 1523 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g1521 1608 FunFam ABC transporter A family member 7 1275 1551 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 320 392 - -
Clacu01g1521 1608 ProSitePatterns ABC transporters family signature. 1425 1439 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g1521 1608 ProSiteProfiles IQ motif profile. 193 215 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 588 622 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 404 642 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 416 430 - -
Clacu01g1521 1608 Pfam IQ calmodulin-binding motif 193 210 IPR000048 GO:0005515(InterPro)
Clacu01g1521 1608 Pfam IQ calmodulin-binding motif 171 190 IPR000048 GO:0005515(InterPro)
Clacu01g1521 1608 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 679 1599 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 1 24 - -
Clacu01g1521 1608 Gene3D - 1275 1546 IPR027417 -
Clacu01g1521 1608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1286 1514 IPR027417 -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 510 524 - -
Clacu01g1521 1608 Pfam ABC transporter 1308 1452 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g1521 1608 Gene3D - 167 216 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 542 570 - -
Clacu01g1521 1608 CDD ABC_subfamily_A 1290 1511 - -
Clacu01g1521 1608 Pfam ABC-2 family transporter protein 912 1218 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Clacu01g1521 1608 ProSiteProfiles IQ motif profile. 169 197 - -
Clacu01g1521 1608 SMART AAA_5 1316 1499 IPR003593 GO:0016887(InterPro)
Clacu01g1521 1608 Pfam Protein of unknown function (DUF4005) 542 629 IPR025064 -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 436 463 - -
Clacu01g1521 1608 SMART iq_5 191 212 IPR000048 GO:0005515(InterPro)
Clacu01g1521 1608 SMART iq_5 168 190 IPR000048 GO:0005515(InterPro)
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 1 32 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 525 541 - -
Clacu01g1521 1608 MobiDBLite consensus disorder prediction 352 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1521 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1521 Clacu-Chr1:27293703 Clacu06g1739 Clacu-Chr6:27991696 2.00E-75 dispersed
Clacu10g0485 Clacu-Chr10:5912294 Clacu01g1521 Clacu-Chr1:27293703 2.80E-10 transposed
Clacu11g0933 Clacu-Chr11:9013000 Clacu01g1521 Clacu-Chr1:27293703 6.30E-12 transposed
Clacu11g1788 Clacu-Chr11:29080696 Clacu01g1521 Clacu-Chr1:27293703 5.40E-09 transposed
Clacu01g1521 Clacu-Chr1:27293703 Clacu06g1738 Clacu-Chr6:27979417 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75