Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1543 ATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTTAGGCCAGCGGATTATGGAAGTTATGGTCATGGAAGTTACGGCCGAGGAGGACACGGTTACGGTCATGGTTATGGTTATGGTCGAAGGGGGGCGGACACGGGCAGAGCTGCATCAGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCGGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCGGGAATATCAGAATTACACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGGAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGTATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACACACCAGCCCTTAGCTCCGGAGGATTACTGA 861 51.34 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27508841 27510751 - ClG42_01g0154300.10 Clacu01g1543 240927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1543 286 CDD MIP 21 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 PANTHER AQUAPORIN-8 5 276 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu01g1543 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Clacu01g1543 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Clacu01g1543 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g1543 286 FunFam Probable aquaporin TIP1-1 66 282 - -
Clacu01g1543 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
Clacu01g1543 286 NCBIfam MIP family channel protein 25 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1543 Clacu-Chr1:27508841 Clacu10g1967 Clacu-Chr10:33205024 5.80E-74 dispersed
Clacu01g1543 Clacu-Chr1:27508841 Clacu04g0996 Clacu-Chr4:24122564 2.40E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1543 K09873 - csv:101208863 495.738