Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1573 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTTCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.68 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSSPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27817923 27818438 + ClG42_01g0157300.10 Clacu01g1573 240957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1573 171 CDD RING-H2_EL5-like 105 148 - -
Clacu01g1573 171 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Clacu01g1573 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 152 IPR013083 -
Clacu01g1573 171 SMART ring_2 106 147 IPR001841 -
Clacu01g1573 171 Pfam Ring finger domain 105 148 IPR001841 -
Clacu01g1573 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Clacu01g1573 171 SUPERFAMILY RING/U-box 82 153 - -
Clacu01g1573 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1573 Clacu-Chr1:27817923 Clacu10g1799 Clacu-Chr10:31602422 2.20E-44 dispersed
Clacu01g1573 Clacu-Chr1:27817923 Clacu07g1515 Clacu-Chr7:29760181 2.40E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1573 - - - 0.0