Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1579 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCACCGCCGCAGCATCCATCGCCGGCTCCGCCGACCAAGCACCAGGCGCTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTTGCTTCCCGACTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGAATACTTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGGCATAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGCAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCGTACAAATTGATGGCTTTGGTATGAAAAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTACGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATTAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCGGAGCCGACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATAATAATTGGATATAACATTTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCCATATTGGGTCGCATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTATAAATTAAGTTCGTACTCGCTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCGAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTTACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAGAGTTGCAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCATGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGACACAGATTCTGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATTACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACAGCTCCAAATGTTGGCGATCGGGTACCTTATGTGATCATTAAAGCAGCCAAAGGCGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGATCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTCGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGCATAATGAAATTTGCTAAGAAACAGCTAACCTGCATTGGCTGCAAGGCTCTACTAAGCAAGGCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGTAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGTTGGAGTTTCTAG 3261 42.87 MNNGSARKSRPPPQHPSPAPPTKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVTSCRGILDRGVQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREADPDIIIGYNICKFDLPYLIERAEALKIPEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPELQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLSKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERWSF 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27852577 27870541 - ClG42_01g0157900.10 Clacu01g1579 240963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1579 1086 FunFam DNA polymerase 90 265 - -
Clacu01g1579 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Clacu01g1579 1086 SMART polmehr3 293 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu01g1579 1086 MobiDBLite consensus disorder prediction 1 31 - -
Clacu01g1579 1086 CDD POLBc_delta 567 960 - -
Clacu01g1579 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Clacu01g1579 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 66 1062 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Clacu01g1579 1086 Gene3D - 294 512 IPR036397 GO:0003676(InterPro)
Clacu01g1579 1086 FunFam DNA polymerase 814 970 - -
Clacu01g1579 1086 Gene3D Helix hairpin bin 641 693 - -
Clacu01g1579 1086 FunFam DNA polymerase 641 693 - -
Clacu01g1579 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Clacu01g1579 1086 FunFam DNA polymerase 333 567 - -
Clacu01g1579 1086 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Clacu01g1579 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Clacu01g1579 1086 NCBIfam DNA polymerase (pol2) 352 957 - -
Clacu01g1579 1086 CDD DNA_polB_delta_exo 290 518 - -
Clacu01g1579 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu01g1579 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu01g1579 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu01g1579 1086 Gene3D - 814 969 IPR042087 -
Clacu01g1579 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Clacu01g1579 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Clacu01g1579 1086 Pfam DNA polymerase family B, exonuclease domain 229 462 IPR006133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1579 K02327 - - csv:101219332 2098.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1579 Clacu-Chr1:27852577 Clacu02g1601 Clacu-Chr2:29368391 2.00E-90 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G14700 67.0 1.2e-265 912.9
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G12620 69.3 6.3e-275 943.7
Clacu08g1734 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Clacu07g0481 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Clacu06g0361 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 9.1e-172 600.5
Clacu11g0941 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.7 1.9e-93 339.3
Clacu09g2284 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.8e-246 847.8
Clacu10g1298 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Clacu01g2525 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Clacu02g0508 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Clacu11g0494 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Clacu01g2678 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Clacu09g0515 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Clacu02g2016 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.3e-163 571.2
Clacu02g2016 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.5e-143 505.8
Clacu09g0874 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.1e-257 885.9
Clacu10g2027 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Clacu09g1643 . 9 629 Core DNA Replication Machinery Family AT2G14050 78.9 2.4e-285 978.0
Clacu02g1224 . 1908 2318 Core DNA Replication Machinery Family AT2G20980 56.4 1.1e-118 423.7
Clacu09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT1G19080 69.8 2.1e-61 232.3
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT3G55490 69.8 2.1e-61 232.3
Clacu05g0167 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Clacu02g1274 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Clacu04g1224 . 151 773 Core DNA Replication Machinery Family AT1G67630 60.7 4.3e-215 744.6
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu08g0161 . 48 491 Core DNA Replication Machinery Family AT5G41880 65.0 1.3e-176 616.3
Clacu01g1579 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Clacu10g1736 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu01g0553 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.2e-37 151.4
Clacu02g2254 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Clacu09g2081 . 7 2057 Core DNA Replication Machinery Family AT1G08260 68.7 0.0e+00 2819.3
Clacu02g2254 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Clacu09g2081 . 29 2148 Core DNA Replication Machinery Family AT2G27120 65.8 0.0e+00 2773.0
Clacu04g1335 . 638 1059 Core DNA Replication Machinery Family AT5G22110 67.0 8.2e-169 590.5
Clacu02g2304 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Clacu10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.7e-173 604.4
Clacu04g0492 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Clacu11g1775 . 66 384 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Clacu08g0732 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Clacu11g0299 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.7e-245 843.6
Clacu10g0107 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Clacu06g1663 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.8e-249 856.3
Clacu10g0107 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.2 8.7e-227 783.9
Clacu06g1663 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.8e-241 830.1
Clacu10g0107 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.2e-224 775.8
Clacu03g1825 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Clacu05g0312 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 8.9e-298 1020.0
Clacu07g1578 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Clacu02g2212 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.2e-288 986.5
Clacu02g2212 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.8e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30