Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1606 ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCTCACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCACGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGCCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAACGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTACTCAGTCAGCTGTCACATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGGAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCGTTCCTCTTTAGCATCGATGGAATCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGGGGAAATGGAAGATTCACATCCTTGCCTGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTCACGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA 1821 45.63 MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPKTQPKNPTHKPKSFDEVSAVSFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLQFGAYRGFVDTRIETRPRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSNDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPSRDSSLLKVQTHLGSPRRTL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28072097 28076167 - ClG42_01g0160600.10 Clacu01g1606 240990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1606 606 Pfam Protein kinase domain 210 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1606 606 MobiDBLite consensus disorder prediction 517 540 - -
Clacu01g1606 606 ProSiteProfiles Protein kinase domain profile. 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1606 606 SUPERFAMILY Protein kinase-like (PK-like) 207 551 IPR011009 -
Clacu01g1606 606 MobiDBLite consensus disorder prediction 21 38 - -
Clacu01g1606 606 MobiDBLite consensus disorder prediction 49 79 - -
Clacu01g1606 606 CDD STKc_MEKK1_plant 208 465 - -
Clacu01g1606 606 FunFam Mitogen-activated protein kinase kinase kinase 207 488 - -
Clacu01g1606 606 MobiDBLite consensus disorder prediction 103 125 - -
Clacu01g1606 606 SMART serkin_6 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1606 606 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524(InterPro)
Clacu01g1606 606 Gene3D Transferase(Phosphotransferase) domain 1 205 482 - -
Clacu01g1606 606 MobiDBLite consensus disorder prediction 1 125 - -
Clacu01g1606 606 MobiDBLite consensus disorder prediction 143 190 - -
Clacu01g1606 606 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 27 472 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1200 Clacu-Chr1:18520627 Clacu01g1606 Clacu-Chr1:28072097 1.50E-18 dispersed
Clacu01g1606 Clacu-Chr1:28072097 Clacu05g0965 Clacu-Chr5:8561300 8.10E-118 dispersed
Clacu01g1606 Clacu-Chr1:28072097 Clacu01g0468 Clacu-Chr1:4654657 1.30E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73249 PF00069 Pkinase 1.10E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1606 K04421 - csv:101203907 1001.12