Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1616 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACCCCGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGACCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGGAACGTGCGGATTAGTGATGACCCACAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGTTGCAGTCAAGTCAGCCGCCGCAACAGCCACCCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCACAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTTACACTGA 708 51.98 MDPHHLPNPSSHLHHPAMEDHHIDLHHHHHDPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPPTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGWKVCLADSSSWNLH 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28189043 28190663 - ClG42_01g0161600.10 Clacu01g1616 241000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1616 235 MobiDBLite consensus disorder prediction 48 66 - -
Clacu01g1616 235 MobiDBLite consensus disorder prediction 200 216 - -
Clacu01g1616 235 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Clacu01g1616 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 208 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1616 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Clacu01g1616 235 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Clacu01g1616 235 MobiDBLite consensus disorder prediction 174 216 - -
Clacu01g1616 235 MobiDBLite consensus disorder prediction 48 81 - -
Clacu01g1616 235 Gene3D - 119 180 IPR036638 GO:0046983(InterPro)
Clacu01g1616 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
Clacu01g1616 235 CDD bHLH_AtIND_like 117 172 - -
Clacu01g1616 235 FunFam BHLH transcription factor 119 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1616 Clacu-Chr1:28189043 Clacu02g1306 Clacu-Chr2:26035364 3.30E-35 dispersed
Clacu01g1616 Clacu-Chr1:28189043 Clacu05g2193 Clacu-Chr5:30540350 2.40E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47028 PF00010 HLH 1.50E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1616 - - - 0.0