Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1617 ATGAGTGGAAGTGGCAGAAAACGCTCGTCAAAATGGGATTTGAGAGAAGATTCTCACTTTGAAACTGACAGTGTGCAAGAACATAGTTGGCCTGGAAAAGAATCACGACCTGGTTGGGTTTCTCCTGAACTTGCAAGTGATGATGGTCCCAAGTGGTCTGGTATGGGGACCACCAATACCATTTCAAAACCTAAGCAAGATTGGGGATTGCAGTTGGAGGAACCTTTACCTGGAACCGGAGCTTCACATAAGGAGGATTACACTAATAAAGGCTATAATAAAAATATGGAAGGCACTGTTGAATGGGAAGCTGATGATAAAAGCTACGGCACAAGAATGTCTCCTGGTCTAGATGGATGGAGAAGACATAGCTCTAACCTGTCTGATAGAAATGATTGGAGCAGGGGTAGGAGCAGAAGCCGTAGTTGGAGCAGAAGCCGGAGTAGAAGTAGAAGTCCTCATAGTTTTAAGCGGGACTCTGGATTTCATGATAGAAACAGAAACAGATCCCGTGTTTCAACTCAACTGTGCAGAGATTTTGCTTCTGGAAGATGCAGGCGAGGTAATGGTTGTCAATTTCTTCACCAGGACAATCAGAATCTGGATGATAGCTGGGAAAATAGGAACAGGAAGGGGGCCCGATCTTTAAGATCAACTCCCCATGATTTTAGGGACTATCCCAGGAGTGGAAGATCAGCTGCTCAATGTACCGATTTTGTGAAGGGAAGGTGCCATAGGGGTGCCTCTTGCAAGTATCCTCACGACAGTGCATTTCATGAACTATCACGAGGTTCTCCAAATGATATTAGCAGAGACAGGGACAATGATAGGAGTAAAGAAGCATACTTCTCACGTGGTGAGCGTGAACCTTGCAGTAGCAGTCTTGTTATCTGTAAATTTTTTGCTGCTGGAACTTGTCGTAATGGAAAAAATTGCAAATTTTCTCATCATAGCCAGCCGCGTGCAAGCCCAGAGAGGAAATCAAGTAGTGATAGATGGGAGCAGGTCCAATGTTCAGATGGTAGGGACCGGTTGTGGGATGGGACAAAATCAAGTGAATTGGCCAGCGGTTCCGATTTCACTCAGTTGAGAGAGGACAAAAGTGAACAAATTGCTAGTCAAGAACCGAGTTACACATGGCCTTCGGAACAAAAATGGGTTCATGGTTCGAACAATGAGAGCAAAACTCAGTGGGATCAAGCTGTTGGCATCAAGGCAGTTCAGAGCAACAAGAATGATACCATTCTGAGCAAGGCAGAGGACGCTGGTGGTTGCATAGGCACTTCTGACCCTCGAGGTCACAGAAAGTGGCCAAGTGATGATATGGAGATGTCTCCTGATTGGCACTACCCTGTGCAACCATCCAATCATGTGGTGAAAGGAGATTGCAACATTATGTCGGATTCTGGCTCTAAAACTTCCATGGCTTTAGCCACTCTTAGCCATGCGATAGTTCAAGAGGCTTTGGCTAAGAAGCAAGACATTGCCATAGAGCCTATATCAGTTGATAATACTCATTTTCGGCAAAGCCATAATTTAACAAAAGATGTTACCATTGCACCAGCATTCAATGATAAGATTACAATTGACAAAACAATTGTTTCACATGCTGAAGGCAATCCTTCTAGTAATATTGTCCTTGGACAAAGAATGGCATATCACACTGATCATCCAGGCAGAACCGTAGTGAATCCGAAAGTGTCAGATGGAAATCTCAGAGTTAAACAGCAGGATGAGGATGGAAGCATGCCAGGAGTTAATTCTGGAACAACTATCACCCCAAACATAGTAACTAGCGAACAAATTACCCAATTAACTAACCTTTCTGTCTCTCTTGCACAATATTTTGGAAATGTGCAACCATTGCCTCAATTGTATGCCTCCCTTAATACACATAGTGTGTCAGAAACACCTTCCTTCCCTTATTCTGATGCATCCATGGGTGCTTTGGGGCTATCGATGAAGTCGGGTTCATCAGGTCCTGTAATTGAATCCTCGAAGCAACAAGATTCTACTCTCTGCAATAGCTTGGAGCTGAAGAAGCTTGAAGTCACTAGAACACCTTCAGACTGTTTGCTGAATTCCGGTGGACAGAAAAACGCTACAGAAGTGAAGGATGAAGTACATATACCAAATTTGCCTCTATCATCTGATCCTTGTGACAAGATTGGCATCTCTGCTAAAGAAACTCTTCATAGGAGTGATGCAATAAATGATGGGAAGCCAGCAGCTGATGGTGAGGCTATCAGAGAGAAGAATGGTGATGGGGATAATGAGAACAAGACTGACCCAGAGGATTCTCAAGAGAATGATACTGCAGAAAATGCAAATGGGAATGATGGGGTCCATGATAAGAAGAAAAGTAAGGATGCTAAGGGAATTCGTGCTTTCAAATTTGCACTTGTGGAGTTTATCAAGGAACTTCTAAAACCTACATGGAAGGAAGGTCATATCAGCAAAGATGTTTATAAAACCATAGTCAAGAAAGTGGTGGACAAAGTGACAGGTACCTTGCAGGGGGGTCATATTCCTCAAACGCAGGAGAAAATTGATCACTATCTTTCATTTTCAAAACCAAAGCTCACCAAACTTGTTCAGGCGTATGTGGACCGAGTTCAGAAGACAACTTGA 2631 43.48 MSGSGRKRSSKWDLREDSHFETDSVQEHSWPGKESRPGWVSPELASDDGPKWSGMGTTNTISKPKQDWGLQLEEPLPGTGASHKEDYTNKGYNKNMEGTVEWEADDKSYGTRMSPGLDGWRRHSSNLSDRNDWSRGRSRSRSWSRSRSRSRSPHSFKRDSGFHDRNRNRSRVSTQLCRDFASGRCRRGNGCQFLHQDNQNLDDSWENRNRKGARSLRSTPHDFRDYPRSGRSAAQCTDFVKGRCHRGASCKYPHDSAFHELSRGSPNDISRDRDNDRSKEAYFSRGEREPCSSSLVICKFFAAGTCRNGKNCKFSHHSQPRASPERKSSSDRWEQVQCSDGRDRLWDGTKSSELASGSDFTQLREDKSEQIASQEPSYTWPSEQKWVHGSNNESKTQWDQAVGIKAVQSNKNDTILSKAEDAGGCIGTSDPRGHRKWPSDDMEMSPDWHYPVQPSNHVVKGDCNIMSDSGSKTSMALATLSHAIVQEALAKKQDIAIEPISVDNTHFRQSHNLTKDVTIAPAFNDKITIDKTIVSHAEGNPSSNIVLGQRMAYHTDHPGRTVVNPKVSDGNLRVKQQDEDGSMPGVNSGTTITPNIVTSEQITQLTNLSVSLAQYFGNVQPLPQLYASLNTHSVSETPSFPYSDASMGALGLSMKSGSSGPVIESSKQQDSTLCNSLELKKLEVTRTPSDCLLNSGGQKNATEVKDEVHIPNLPLSSDPCDKIGISAKETLHRSDAINDGKPAADGEAIREKNGDGDNENKTDPEDSQENDTAENANGNDGVHDKKKSKDAKGIRAFKFALVEFIKELLKPTWKEGHISKDVYKTIVKKVVDKVTGTLQGGHIPQTQEKIDHYLSFSKPKLTKLVQAYVDRVQKTT 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28197395 28203910 - ClG42_01g0161700.10 Clacu01g1617 241001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1617 876 MobiDBLite consensus disorder prediction 319 349 - -
Clacu01g1617 876 Pfam RNA-binding, Nab2-type zinc finger 235 252 - -
Clacu01g1617 876 Pfam RNA-binding, Nab2-type zinc finger 176 195 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 421 440 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 312 390 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 1 93 - -
Clacu01g1617 876 SUPERFAMILY CCCH zinc finger 170 198 IPR036855 GO:0046872(InterPro)
Clacu01g1617 876 SMART c3hfinal6 230 256 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 SMART c3hfinal6 293 318 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 SMART c3hfinal6 171 197 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 MobiDBLite consensus disorder prediction 114 168 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 731 788 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 261 284 - -
Clacu01g1617 876 Pfam CCCH-type zinc finger 297 316 IPR041367 -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 731 768 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 211 228 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 52 66 - -
Clacu01g1617 876 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 MobiDBLite consensus disorder prediction 153 168 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 123 139 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 8 30 - -
Clacu01g1617 876 MobiDBLite consensus disorder prediction 372 390 - -
Clacu01g1617 876 Gene3D - 170 260 - -
Clacu01g1617 876 Gene3D - 267 327 - -
Clacu01g1617 876 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 MobiDBLite consensus disorder prediction 265 284 - -
Clacu01g1617 876 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 9 874 IPR052650 -
Clacu01g1617 876 ProSiteProfiles Zinc finger C3H1-type profile. 292 319 IPR000571 GO:0046872(InterPro)
Clacu01g1617 876 MobiDBLite consensus disorder prediction 211 230 - -
Clacu01g1617 876 SUPERFAMILY CCCH zinc finger 294 317 IPR036855 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1617 Clacu-Chr1:28197395 Clacu06g1657 Clacu-Chr6:27341021 6.00E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1277 . . . . . . . Bma15g00800 . . . Cma07g00793 . Car07g00779 . Cpe19g00536 . Bhi03g01370 . . . . . . Cla01g01523 Cam01g1593 Cec04g1237 Cco04g1307 Clacu01g1617 Cmu01g1503 Cre04g1182 . . Cone6ag1291 . Lsi01g01141 . . Cme08g01076 . . . . . . . . . . Cmo07g00816 . . . . . . . . . . . . . . . . . . . . . Csa06g02790 Chy02g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002735 2 10 1 1 1 1 4 1 1 1 1 1 2 1 1 4 1 2 2 1 1 2 1 1 1 1 1 7 2 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47029 PF18044 zf-CCCH_4 8.70E-06 CL0537 Clacu TF