Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1622 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATTTCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCGGATTCCCTTCACCAACGACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGCTTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCTTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATTCCGAAACGAATCAAAATCAAATTAATTCAGCTGGGAGTGATAAAATCAGTAACGAAGCTTCTCTCAGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGTTGTTAATGCAGAGCAATTGTTCGGCGCCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.51 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKMDRNCISSLLLLLRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISIPKRIKIKLIQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28278215 28279441 - ClG42_01g0162200.10 Clacu01g1622 241006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1622 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Clacu01g1622 408 SUPERFAMILY RING/U-box 6 78 - -
Clacu01g1622 408 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Clacu01g1622 408 CDD RING-Ubox_PUB 11 63 IPR045210 -
Clacu01g1622 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g1622 408 SUPERFAMILY ARM repeat 162 394 IPR016024 -
Clacu01g1622 408 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630(InterPro)
Clacu01g1622 408 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g1622 408 Gene3D - 81 400 IPR011989 -
Clacu01g1622 408 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1622 Clacu-Chr1:28278215 Clacu05g1286 Clacu-Chr5:12855877 6.60E-31 dispersed
Clacu02g0047 Clacu-Chr2:502951 Clacu01g1622 Clacu-Chr1:28278215 2.10E-34 transposed
Clacu05g2866 Clacu-Chr5:35847462 Clacu01g1622 Clacu-Chr1:28278215 7.60E-28 transposed
Clacu08g1825 Clacu-Chr8:27500570 Clacu01g1622 Clacu-Chr1:28278215 1.40E-34 transposed
Clacu01g1622 Clacu-Chr1:28278215 Clacu02g0067 Clacu-Chr2:664261 3.70E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1622 - - - 0.0