Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1623 ATGGTCTTCGACGAAATCTTTGAATGTGCTAAGCTAAGTAATGAGCAACAAAATTACTTATTATGCTTTCAGGCTTACACCGCCCGCTGTTTCCACTCCAATCCTGACCGACAAATACGATCGCCGACCTACATCGGAACTTCGCTCACTGGAATGACCCGAGACGGCGTACAATTTGAAGCCGCGAAACGATCATATCGGAATGCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATTTTGAAGAACAGAGGAGAATATGTAAAAGCCCTCAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCAACGTGCCAGTCCCTGGGCGAGGTCTATCTTAGGCTCGAACACTTTAAAGATGCTTTAATTTATCAGAAGAAACATTTAGAGCTAGCCAAAAATGCTAATGACCTCGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACATACCATGAGCTATTTTTGAAATCTGACGATGATCATTTTTCAGTAAGAAATGCCAAAAAATATTTCAAGGCTGCCATGGAACTAGCAAAGTTTCTGAAAGAGCACCCACCAAAAATTGGATGTTCATTTCTCAAGGAGTATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGAGGCCAAAAAGATCTTAACGAAAGGACTAGAGATCTGCGAGGAAGAAGAGGTGGATGAAGATGATGATGGTCGCAGCAGGCTCCATCACAACCTAGGAAGTGTATATATGGAGCTAAGATTGTGGGATCAAGCTAAGAAGCATGTTGAGAAGGACATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGGAAGGCTCTTCATTTAGCAAAATCAATGGAAGATGAGGATGCTTTGGCGAGGCAAATTGATCAGAATATCAATACTGTTAAACAAGCTATACAAGTGATGGTTGAACTAAGAAAAGAAGAACAGAATCTTAAGAAGCTAATGAGGGAAATGGTCACTGCTAGAGGCACACCTCGTGAGCGCAAATGTCTACTGCAGCAAAATGCTTCTCTTGATTGCTTAATTGAAAAGTCAAGTACGATCTTTGCATGGATGCAGCATCTTGAATTTGCAAAAAGGAAGAAGAGAGTAGCGAGTGAACTCTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCATATCAAAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATTGGTAATTCAGAGGGACAAGCACTGGCCAAGATTAATATTGGTGATGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGGTGAGGCTAAACTTCCTTCCGTCCAGCTTTCAGCACTGGAGAACATGCATTATAGCCACATGATACGATTTGATAATGTAGAAGAAGCTAGGCGGTTACAGTCTCAAATTGACCAATTAAAAGAGAAAACGAAAAGTGGCAGTGAGACAAAATTTGTGGCAGAGGAGTGCTGCTCTGAAACTGATACAGAAATAAATGAGGCTCTGTCAGACAGTCCATCTGATGAGTGCTCCTTGTTAGAAACTAGAAAATCTTGTAACAGCAGATTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTACTTCACCCCCCAAACGGCATGAAAGGTCACCTAAAATCAAATCAATTGACATGGAAAAATGCAATACTAATTCTAACCCATCTGAAATATCACCTAAAAGTTTGTCTAAGTCAGTTGGTAGCCAACAAACAACCATTGGCCGTAAACGTGTTCGTGTGATTCTCTCTGATGATGAGGGTGAGGATGAAATGATGGATTTCTCAAAATCAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGACAACATGAATAAACAATACTCAGGAAATCCTGCAGCTGAAATTAAGGAGGGTTCAGCAACTACCAGCAAACATGCAAGCAAGTCTTACGAAGACATTGAAGAAAGCACTGGTTCATATAAATACAAGAGTCGAATCATCGCTGCTCAAAATCATAAAATTTTTGGAACCCCAAATGCTGATGAAAATTTCCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCTGAAAATCTGTTCCATAAATATAATGCTACCAAGTCAAACCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAGTTGATAATGAGCTGATATATGTAGAGGTTGCTGTATTTAGCGATATGATAAGCATCGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCCTTTGAAAAGAGATCAGAGGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACTCTGGAGACCCTTGAATTTTCAAAAACCTCCGACCATGGGAAGAATCTTTTGTTCGAAGCTGTGGTCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTACATTGACTACTGCAAGGAGTTATCTGAGGCACCTAACATGAAGCTGCTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTGTCTGATTGTGATTTGCAAGACTTATCTATAAGTCCATTATTGAATGCGCTGCACACCCAGAAAACTTTTGCCATCTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTCTTCAAGCAGTCCAGCCAGACACATGACTTAACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATTCCAGATTTGTGAATGCCCTATTCTGTTCACTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTCACTGACGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGAGCTTGAACATCGAACGATGTTCCATCACATCTAGAACAATTCAGAAGGTTGCTGATGCACTGGAAGTTGGAGCGTCCCTGGAAAAGCTCTATATTGGATACAACAACTCAATCTCTGGAAATGCACTCAGTAGTTTATTTGTTAAGCTCACAGTACTGAATAGGTTTACTAGTCTTAGTCTAAGTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAGCTTATTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGATGCTGCATTAGGGATAACTGAGTCGTTTAGCGGAAGTGAAGAGCTTGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTACCTTGTTAAATTCGGTGGCTGCATTTCTATTATACAACGCATTCATGAGCTGAACCTTGCAGGGAATGCTATCATGCAAGAGGGTTGTAATGCAGTATCGTCACTAATAGCTAACCCTCAATGTGGCATTAAAGTCTTGGCTCTCAACAAGTGCCAGCTTGGCCTAGCTGGAGTTGTTCAAATCATTCAGGCCGTAGCAGGTAACCACTGTCTTGAAGAGCTCAATCTTGCTGATAACGTTGATCTCGATAAACATGCTCTGCAATGTAACATAATAGAGAAAGAAAGTAAACAACTTATACAACCATGTCATGACATATCTAAGCCTCATGACCTAACATGTTCAATCAAGGAATTGGACACTGCTCAACAGAATTTAGAGGAGTTTAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAAAGAAACTGCAGCATCTGGTATCGATGATAGTTGTACAAGTTCATGTGAAAGAAAATCCGCATCTCTTGATTGCCAGTTTATTTTATCACTTTCAACTGCAATTGGGATGGCAAAGACATTGCAATTACTGGATCTTAGCAATAATGGGTTTTCTGCCCAAGAGACGGAAACAATATTCTGTGCATGGTCAACTTCGAGAACTGATTTGCCCCAAAGACATATTAAGGACAACATAAATCCTTCGATGAAGACCGCGGCAAGATGGCGAGGATTGAAGAGGGAGCCTAAAATTACTTTGATGAACACAAGTCACGGGTGGACTGACTTATGGGATGTGGAGGAAAGTATTCTTTAA 4248 40.7 MVFDEIFECAKLSNEQQNYLLCFQAYTARCFHSNPDRQIRSPTYIGTSLTGMTRDGVQFEAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHFSVRNAKKYFKAAMELAKFLKEHPPKIGCSFLKEYIDAHNNLGMLEMDLDNLEEAKKILTKGLEICEEEEVDEDDDGRSRLHHNLGSVYMELRLWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKQAIQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDCLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYQKLRKFTKSIKWYVKSWEVYKSIGNSEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAGEAKLPSVQLSALENMHYSHMIRFDNVEEARRLQSQIDQLKEKTKSGSETKFVAEECCSETDTEINEALSDSPSDECSLLETRKSCNSRFNSSKSLADLEEPNDAVTFTSPPKRHERSPKIKSIDMEKCNTNSNPSEISPKSLSKSVGSQQTTIGRKRVRVILSDDEGEDEMMDFSKSRPHLCRGENSATSDDNMNKQYSGNPAAEIKEGSATTSKHASKSYEDIEESTGSYKYKSRIIAAQNHKIFGTPNADENFPSDSAASGSKFEVDISENLFHKYNATKSNPSEQGECVTFKVDNELIYVEVAVFSDMISIESAKEELACMYYLQLPFEKRSEGLLPVIQHISHDGRTLETLEFSKTSDHGKNLLFEAVVNGWVSKPLIKLYIDYCKELSEAPNMKLLKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALFQICECPILFTRLEVLNISGNRLTDACGSYLSTILKNCKGLWSLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFTSLSLSGLKLSKPVMEGLLQLIKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRIHELNLAGNAIMQEGCNAVSSLIANPQCGIKVLALNKCQLGLAGVVQIIQAVAGNHCLEELNLADNVDLDKHALQCNIIEKESKQLIQPCHDISKPHDLTCSIKELDTAQQNLEEFNTEYNQLEVADSEEPIKETAASGIDDSCTSSCERKSASLDCQFILSLSTAIGMAKTLQLLDLSNNGFSAQETETIFCAWSTSRTDLPQRHIKDNINPSMKTAARWRGLKREPKITLMNTSHGWTDLWDVEESIL 1415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28308517 28323477 - ClG42_01g0162300.10 Clacu01g1623 241007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1623 1415 Coils Coil 1264 1291 - -
Clacu01g1623 1415 ProSiteProfiles TPR repeat region circular profile. 299 328 - -
Clacu01g1623 1415 Pfam Tetratricopeptide repeat 217 247 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 PANTHER PROTEIN TONSOKU 52 1376 IPR044227 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006325(InterPro)|GO:0009933(InterPro)|GO:0009933(PANTHER)|GO:0040029(InterPro)|GO:0072423(InterPro)
Clacu01g1623 1415 SUPERFAMILY HCP-like 214 499 - -
Clacu01g1623 1415 MobiDBLite consensus disorder prediction 610 624 - -
Clacu01g1623 1415 FunFam Protein TONSOKU 53 207 - -
Clacu01g1623 1415 MobiDBLite consensus disorder prediction 596 726 - -
Clacu01g1623 1415 MobiDBLite consensus disorder prediction 659 681 - -
Clacu01g1623 1415 MobiDBLite consensus disorder prediction 625 657 - -
Clacu01g1623 1415 FunFam Protein TONSOKU 889 1260 - -
Clacu01g1623 1415 Pfam Tetratricopeptide repeat 260 330 - -
Clacu01g1623 1415 Pfam Tetratricopeptide repeat 432 500 - -
Clacu01g1623 1415 Coils Coil 349 379 - -
Clacu01g1623 1415 SMART LRR_RI_2 1192 1219 - -
Clacu01g1623 1415 SMART LRR_RI_2 1163 1190 - -
Clacu01g1623 1415 SMART LRR_RI_2 937 964 - -
Clacu01g1623 1415 SMART LRR_RI_2 995 1022 - -
Clacu01g1623 1415 Gene3D Ribonuclease Inhibitor 888 1392 IPR032675 -
Clacu01g1623 1415 SMART tpr_5 216 249 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 259 292 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 430 463 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 299 332 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 79 112 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 119 152 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SMART tpr_5 470 503 IPR019734 GO:0005515(InterPro)
Clacu01g1623 1415 SUPERFAMILY TPR-like 63 172 IPR011990 GO:0005515(InterPro)
Clacu01g1623 1415 SUPERFAMILY RNI-like 903 1363 - -
Clacu01g1623 1415 MobiDBLite consensus disorder prediction 683 718 - -
Clacu01g1623 1415 Gene3D Tetratricopeptide repeat domain 386 548 IPR011990 GO:0005515(InterPro)
Clacu01g1623 1415 Gene3D Tetratricopeptide repeat domain 52 366 IPR011990 GO:0005515(InterPro)
Clacu01g1623 1415 Coils Coil 215 249 - -
Clacu01g1623 1415 ProSiteProfiles TPR repeat profile. 299 332 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1623 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31