Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1629 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTCGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 48.24 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28384949 28386391 + ClG42_01g0162900.10 Clacu01g1629 241013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1629 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Clacu01g1629 377 Gene3D - 10 371 - -
Clacu01g1629 377 PRINTS Actin signature 51 62 IPR004000 -
Clacu01g1629 377 PRINTS Actin signature 63 85 IPR004000 -
Clacu01g1629 377 PRINTS Actin signature 142 161 IPR004000 -
Clacu01g1629 377 PRINTS Actin signature 28 37 IPR004000 -
Clacu01g1629 377 PRINTS Actin signature 117 130 IPR004000 -
Clacu01g1629 377 PRINTS Actin signature 238 254 IPR004000 -
Clacu01g1629 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Clacu01g1629 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Clacu01g1629 377 FunFam Major actin 261 340 - -
Clacu01g1629 377 FunFam Actin, muscle 182 273 - -
Clacu01g1629 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Clacu01g1629 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Clacu01g1629 377 SMART actin_3 7 377 IPR004000 -
Clacu01g1629 377 FunFam Putative actin-related protein 5 341 369 - -
Clacu01g1629 377 Gene3D - 140 340 - -
Clacu01g1629 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Clacu01g1629 377 Pfam Actin 5 377 IPR004000 -
Clacu01g1629 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Clacu01g1629 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Clacu01g1629 377 PANTHER ACTIN 8 369 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1629 K10355 - - csv:101215469 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1629 Clacu-Chr1:28384949 Clacu10g1739 Clacu-Chr10:30918767 2.00E-215 dispersed
Clacu11g0937 Clacu-Chr11:9066252 Clacu01g1629 Clacu-Chr1:28384949 5.00E-97 transposed
Clacu09g1411 Clacu-Chr9:19447196 Clacu01g1629 Clacu-Chr1:28384949 1.30E-212 transposed
Clacu01g1629 Clacu-Chr1:28384949 Clacu02g0071 Clacu-Chr2:723767 1.00E-219 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.9e-215 742.7
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.2e-213 736.1
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.7e-209 723.8
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Clacu01g1629 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu02g0071 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Clacu09g1411 . 32 408 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Clacu10g1739 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Clacu04g0866 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Clacu02g2076 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu07g0312 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Clacu09g2010 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT2G19760 73.3 5.2e-54 207.2
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT2G19760 79.3 1.1e-48 189.5
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29350 71.0 8.3e-52 199.9
Clacu11g0348 . 1 111 Cytoskeleton Gene Families AT4G29350 79.3 1.6e-47 185.7
Clacu11g0348 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Clacu11g0347 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Clacu09g0029 . 328 458 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Clacu11g1685 . 325 455 Cytoskeleton Gene Families AT4G29340 73.1 2.4e-54 208.4
Clacu07g1338 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Clacu11g0348 . 1 112 Cytoskeleton Gene Families AT4G29340 67.0 7.2e-43 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276