Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1633 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTTGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTCACAACTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTATGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAATCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCCGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGCGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATTCGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG 1026 39.28 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHNSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTIQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28420305 28424595 - ClG42_01g0163300.10 Clacu01g1633 241017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1633 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Clacu01g1633 341 PANTHER WAT1-RELATED PROTEIN 1 314 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu01g1633 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Clacu01g1633 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Clacu01g1633 341 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1633 Clacu-Chr1:28420305 Clacu01g1635 Clacu-Chr1:28454863 3.10E-114 dispersed
Clacu01g1630 Clacu-Chr1:28398144 Clacu01g1633 Clacu-Chr1:28420305 9.00E-114 proximal
Clacu01g1633 Clacu-Chr1:28420305 Clacu01g1634 Clacu-Chr1:28434093 2.50E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1633 - - - 0.0