Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1657 ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCGCTATCACCACCAATTTCATATCTTTTCCAGAAGCCAACAACAACAACAACAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACACTATTTCTGTCAACAACAACAACAATCCCTTTTCCCTTTTTTCTTCCCTTCAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTCTTCTTCCTCTCTCTGGGATGAAAAGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGGTGACGACGACAACGACGATGACTGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTCCATCCAAGAAGTTACTATCGATGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG 738 44.04 MRSSASEEEIMVSLFQADQEAAAVNAAAITTNFISFPEANNNNNNNNVVVQQSLKPFSFSTQHYFCQQQQQSLFPFFFPSTTAPSNLLSSHNTPSSSSLWDEKERFMRGRNNGIGNYVGDDDNDDDCKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28674368 28676723 - ClG42_01g0165700.10 Clacu01g1657 241041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1657 245 FunFam WRKY transcription factor 57 149 223 - -
Clacu01g1657 245 SMART WRKY_cls 163 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1657 245 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 224 IPR044810 GO:0003700(InterPro)
Clacu01g1657 245 Gene3D WRKY domain 138 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1657 245 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1657 245 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1657 245 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1657 Clacu-Chr1:28674368 Clacu02g0102 Clacu-Chr2:1091435 3.30E-46 dispersed
Clacu01g1657 Clacu-Chr1:28674368 Clacu01g1664 Clacu-Chr1:28770617 1.40E-20 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47033 PF03106 WRKY 4.40E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1657 - - - 0.0