Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g1672 | ATGACACTTAGTGTTGTTACTCATATTCATCGAGCTCATGATCGTATTACTGAAGTCTTACACGAAGCTGGTTCCACTTTTTTCTTCAAAGGCGTTTGGTTTTCAGGTATGGACTTTCTCCTCACAGTTGACCCTTCAAATATCCACCATATTTTGAGTGCAAATTTCGAACGATACCCAAAAGGCCCTGATTTCAAGTATATTTTTGACGTTTTGGGAGATGGGATTTTCAACTCCGATTCAGATGTTTGGAAGAATCAACGCAAAACAGCTCATTCCTTGTTTCATGATGAGAATTTTCTTCAACTCTTGGAGAAAATTACATTGAACAAAGTGAAGGAAGGGCTTGTTCCGGTGCTTGAAAGTGCTTGTGAAAATGGGTTGGTGTTGGATTTGCAAGATTTGTTTCAGAGATTCTCTTTTGATTCAACTTGTATGTTGGTCACTGGCTTCGACCTCCATAGTTTATCTCTTGAGTTTCCTCAAGTTCCTTTTTCTAAGGCCATGGATGATATTGAGGAAGTGATTTTTCTGCGACATTTTTTCCCTAAAAAAATATGGGAATTTCAAAAGAAACTCCAAATTGGACAACCCAAAAGGCTGGAACATGCTTGGAAAATCATAGATGAAACCATCGCCAAATTGATAGCCTCCAAAAGGGAGAGGTTGAAAAATAAGGTGAAAGAAGAAGGAGATGAGCAAGGAGGAGGAGTTGATTTGATTACATCATATATTACAAACAAAAACAAAGATGATAAATTTCTTAGAGATACGATTTTAAATTTCATGATCGCTGGTAGAGACACTCTAAGTTCAGCTCTTTCTTGGTTTTTCTTTTGTCTTTCGAATAATCCCAACATCATAGGGAGGATTAGGGAAGAGCTCGAAACAATGATTCCAATGAATGAAGCTCGAGATCAATGGCGGATATTTTCGATTGAAGAGGTGGATAAGTTAGTTTACTTCCATGGAACTTTGTGTGAAGCTCTTAGACTATATCCCCCAGTCCCACTGCAACATAAGGTGTCAATACAACATGATATCCTCCCAAGTGGTCATCACATAAATCCCAATACAAAGATTGTGTTTTCTTTATATGCATTGGGAAGAATGAGTGATGTGTGGGGGAAAGATTGCATGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAGGGAAAAATCAAACATATGCCATCTTATAAATTCTTGGCCTTCAATGCTGGGCCAAGAACTTGCTTAGGAAAACAAGTGGCGTTCATTGAGTTGAAAATAGTTGGAGCTGCCATTATTCATAACTATAATATCATTCAGCAAGCAGGGCATGACGTTGTTCCAAATGCTTCCGTAATTCTTCATATGAAGCATGGATTCAAAGTTAGAGTTACAAAGAGATGGACTTGA | 1401 | 38.12 | MTLSVVTHIHRAHDRITEVLHEAGSTFFFKGVWFSGMDFLLTVDPSNIHHILSANFERYPKGPDFKYIFDVLGDGIFNSDSDVWKNQRKTAHSLFHDENFLQLLEKITLNKVKEGLVPVLESACENGLVLDLQDLFQRFSFDSTCMLVTGFDLHSLSLEFPQVPFSKAMDDIEEVIFLRHFFPKKIWEFQKKLQIGQPKRLEHAWKIIDETIAKLIASKRERLKNKVKEEGDEQGGGVDLITSYITNKNKDDKFLRDTILNFMIAGRDTLSSALSWFFFCLSNNPNIIGRIREELETMIPMNEARDQWRIFSIEEVDKLVYFHGTLCEALRLYPPVPLQHKVSIQHDILPSGHHINPNTKIVFSLYALGRMSDVWGKDCMEFKPERWISEKGKIKHMPSYKFLAFNAGPRTCLGKQVAFIELKIVGAAIIHNYNIIQQAGHDVVPNASVILHMKHGFKVRVTKRWT | 466 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 28858229 | 28859629 | + | ClG42_01g0167200.10 | Clacu01g1672 | 241056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g1672 | 466 | CDD | CYP86A | 27 | 457 | - | - | |
| Clacu01g1672 | 466 | PANTHER | CYTOCHROME P450 | 4 | 457 | - | - | |
| Clacu01g1672 | 466 | PRINTS | P450 superfamily signature | 403 | 412 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | P450 superfamily signature | 265 | 282 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | P450 superfamily signature | 412 | 423 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | P450 superfamily signature | 324 | 335 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | Gene3D | Cytochrome P450 | 3 | 465 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | Pfam | Cytochrome P450 | 20 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | SUPERFAMILY | Cytochrome P450 | 7 | 464 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 405 | 414 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | E-class P450 group I signature | 254 | 271 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | E-class P450 group I signature | 274 | 300 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | E-class P450 group I signature | 412 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | E-class P450 group I signature | 323 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1672 | 466 | PRINTS | E-class P450 group I signature | 402 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1670 | Clacu-Chr1:28817393 | Clacu01g1672 | Clacu-Chr1:28858229 | 7.10E-231 | dispersed | |
| Clacu01g1672 | Clacu-Chr1:28858229 | Clacu01g1675 | Clacu-Chr1:28879202 | 5.60E-236 | dispersed | |
| Clacu01g1671 | Clacu-Chr1:28842713 | Clacu01g1672 | Clacu-Chr1:28858229 | 2.50E-252 | tandem | |
| Clacu01g1672 | Clacu-Chr1:28858229 | Clacu01g1673 | Clacu-Chr1:28867409 | 1.20E-33 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g1672 | - | - | - | 0.0 |