Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1687 ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGCCTGTTCACATCATGCTACTGGGAAACTTCTTTACCCCACATCATGCTACTGGGAAACTTCTTTACCCCAACAGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAGAATTACAATTGACTTTGCATTTGAAATTGAATTGTAG 858 40.56 MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWPVHIMLLGNFFTPHHATGKLLYPNSLIFVVLHLLLVLNQSLVCCARITIDFAFEIEL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29003832 29005137 + ClG42_01g0168700.10 Clacu01g1687 241071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1687 285 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 17 88 - -
Clacu01g1687 285 SUPERFAMILY RING/U-box 30 87 - -
Clacu01g1687 285 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Clacu01g1687 285 CDD RING-HC_AtRMA-like 32 76 - -
Clacu01g1687 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Clacu01g1687 285 SMART ring_2 34 74 IPR001841 -
Clacu01g1687 285 MobiDBLite consensus disorder prediction 98 120 - -
Clacu01g1687 285 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Clacu01g1687 285 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Clacu01g1687 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Clacu01g1687 285 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1687 Clacu-Chr1:29003832 Clacu10g1745 Clacu-Chr10:30980823 9.30E-24 dispersed
Clacu01g1687 Clacu-Chr1:29003832 Clacu08g1698 Clacu-Chr8:26573550 2.80E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1687 K10666 - csv:101205026 449.514