Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1693 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCGACTCGACGCCTTCTCCGCCCCGATTCCGCCATCTACGGTGGCCGAAATAGACGAACACCACCCCCACCACCATCACCAACAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCGCGATCTCCATCGCCAGCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCCGCTGCTGCTGCCGCCGTCGCGAAAGCAGATGAATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTGTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTTGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCCACTACCGGTGGCTCGACATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTCATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAAAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATCACAAGATGACACCACACACAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACACCCACCACTGCTCCACCACCCTCAGCCAGCACCGTGGAAGAAGTAGCGGCGGAGTTCACGGCGGCGCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGAAGATGTTACAACTGCGGCGGCTGACATGCATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAGTACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2094 48.52 MGIAKGPLILSNKATSCANSSMSHDYHHHHHQGIFTFSNGTLDKSNSSTLPQHIRPEKLRLDAFSAPIPPSTVAEIDEHHPHHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPASTSSTLHMLLPNPPANALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAAVAKADELRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAATTGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDESQDDTTHNNNNNKTQNNPINNSQNPTPTTAPPPSASTVEEVAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSEDVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGSTSAAAAADNPSFSLRDFGHS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29064810 29069708 + ClG42_01g0169300.10 Clacu01g1693 241077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1693 697 Pfam Homeobox KN domain 504 543 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g1693 697 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Clacu01g1693 697 Gene3D - 490 552 - -
Clacu01g1693 697 ProSiteProfiles 'Homeobox' domain profile. 484 547 IPR001356 GO:0003677(InterPro)
Clacu01g1693 697 MobiDBLite consensus disorder prediction 337 361 - -
Clacu01g1693 697 CDD homeodomain 487 548 IPR001356 GO:0003677(InterPro)
Clacu01g1693 697 SMART HOX_1 487 551 IPR001356 GO:0003677(InterPro)
Clacu01g1693 697 MobiDBLite consensus disorder prediction 142 166 - -
Clacu01g1693 697 MobiDBLite consensus disorder prediction 142 156 - -
Clacu01g1693 697 Pfam Associated with HOX 303 434 IPR006563 -
Clacu01g1693 697 MobiDBLite consensus disorder prediction 559 602 - -
Clacu01g1693 697 MobiDBLite consensus disorder prediction 333 365 - -
Clacu01g1693 697 FunFam BEL1-like homeodomain protein 4 490 552 - -
Clacu01g1693 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 213 581 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g1693 697 SMART prehox3 298 435 IPR006563 -
Clacu01g1693 697 Coils Coil 374 401 - -
Clacu01g1693 697 MobiDBLite consensus disorder prediction 570 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1693 Clacu-Chr1:29064810 Clacu02g1333 Clacu-Chr2:26379173 2.60E-128 dispersed
Clacu01g1693 Clacu-Chr1:29064810 Clacu02g2295 Clacu-Chr2:35989727 1.40E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47037 PF07526 POX 1.30E-48 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1693 - - - 0.0