Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1705 ATGATCGTGTCGACCACTTCTCTCACCAGCTTCCAAGGAGGGGATGATTCTGTTTGTTCCTTGTTCAGTTGGAGTAAGTTGCAGTCAATTATGACTTTGCATCGAAACTTTTTGATCGTTGTAATCGCTATTTTCTCGGCTTCTTTAACAATCGCCGAGGAGTTGAGGTCCTGCGAAACCGGAAATTGGGCTGAATCTGTACGCTATCCGTTTGGATTCTCAAACTCGAGCCTAATCAAATTGAATTGCAGCAAAAATGGCGAGATTCAAATCGGCAGATTCCAGGTCCAGAACATTACTGAAAGGAGCATCCTCATCAAACTTCCTACAGAGTGCAATATCTCTATCAATTCAATTTCAGAATTGTCCAGCCCAAACTACAAGCCCACTCTCCGCAACAGTCTCCTGTTGAATTGTACCGAACAACCACTGCCATGCGGAGTAATGGCCAATTTGAGCCTGAATCAGCCAACGGACTGCGGCTTCAAGAGTAACAATCTCAGCTGCTTCACCAGGACCGAGCAAAATGGATTTCTGCCTCCTTTAAATAAGTGCCACTCCCTTCTGTCCTCCGTATTCGTTAATTTTACGTCAAAATCAACCTCTTCGTTCGAGGTCGAGTTTGGGGTCATTGAGTTAGAGTGGTGGCTCTCACCTTTGCCTTCCGTACGATGCTCAAAAAATGCCAATCGCGCGAACATTACCAGCTTGACGGAGAACCTAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCCTATGGCGACGTCGGCGGCGGCTGCCGGAAAGTTTCTCACAAGTGCAATACTTCAACATGCATTACTGGCCGATGTGGCGGAAGCAAAGTCACTGCTCTAATCGCAGGTGTCGTTGTTGGGGCTTTTCTAATGGCTGTCTTGACCCTTATCTGTTACTGCATCCGACGCCGCTCAATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCCGGAAATTCCAGTGTTACTTTATATCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCTGAGAAACAAAGGCTGGGAACTGGAGCCTTCGGTACAGTCTATGCCGGAAGGCTTCACGAGGACGAGTGGGTTGCTGTAAAAAAGATCAAATATAGAGACCACAATAGCATTGAACAGGTTATGAATGAGATAAAACTGCTTTCCTCGGTGAGCCACCCAAATCTGGTCCGCTTGCTTGGCTGCTGCATTGAGGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTCTCTCAGCATCTTCAGAGAGAGCGTGGAAATGGACTCCCATGGACGACACGTCTCACCATTGCAGCCGAAACTTCTCGTGCAATAGCATACCTCCATTCTTCTGTGCATCCACCAATATATCATAGAGACATCAAATCGAGCAATATACTTCTGGATCATGGTTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCACGACTTGGTATGACAGAAATATCACACGTCTCAACAGCTCCACAAGGCACCCCTGGTTACGTTGATCCACAATACCATCAAAATTTTTATCTTTCAGATAAAAGTGATGTATATAGTTTTGGAGTAGTCCTCGTAGAGATAATAACAGCATTAAAAGTGGTTGATTTCACTCGTCCCCAGAGTGAAGTGAACTTAGCTGCACTTGCCATTGATAGGATTGGGAGAAATTCTGTGGATGAATTAATTGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTATACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTCCACAGTGACATGAGGCCTTCGATGACAGAAGTAGCAGAGGAATTGGAAAACATCAGACGCAGCGGGTGGACATCAATGGAGGAGCATTTTTGTGCAGCATCATCAGCAGGGTCGGCTTGCTCATCTCCTCGTAGTCTAAGCGAGAGATCCATAAGTAGCATTACAATTAAGAAGGCCGGGTTGCTTGCAGGACTGGGGAGCCAGAGATTGATAATCCCGCCGGATAACAACCATACGAAGGACTATCTGCCTCCTGTTGAGGAGGTTATGGATAGTTCCCCAGTTTCAATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAATGTAGCACAGTGA 2181 45.67 MIVSTTSLTSFQGGDDSVCSLFSWSKLQSIMTLHRNFLIVVIAIFSASLTIAEELRSCETGNWAESVRYPFGFSNSSLIKLNCSKNGEIQIGRFQVQNITERSILIKLPTECNISINSISELSSPNYKPTLRNSLLLNCTEQPLPCGVMANLSLNQPTDCGFKSNNLSCFTRTEQNGFLPPLNKCHSLLSSVFVNFTSKSTSSFEVEFGVIELEWWLSPLPSVRCSKNANRANITSLTENLGFRCQCIEGFEGNAYGDVGGGCRKVSHKCNTSTCITGRCGGSKVTALIAGVVVGAFLMAVLTLICYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRLHEDEWVAVKKIKYRDHNSIEQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRNSVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELENIRRSGWTSMEEHFCAASSAGSACSSPRSLSERSISSITIKKAGLLAGLGSQRLIIPPDNNHTKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAQ 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29180050 29184183 - ClG42_01g0170500.10 Clacu01g1705 241089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1705 726 SMART serkin_6 350 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1705 726 SUPERFAMILY Protein kinase-like (PK-like) 330 623 IPR011009 -
Clacu01g1705 726 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Clacu01g1705 726 ProSiteProfiles Protein kinase domain profile. 350 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1705 726 MobiDBLite consensus disorder prediction 703 726 - -
Clacu01g1705 726 FunFam Wall-associated receptor kinase-like 20 426 635 - -
Clacu01g1705 726 Pfam Protein tyrosine and serine/threonine kinase 353 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1705 726 FunFam Wall-associated receptor kinase-like 14 317 425 - -
Clacu01g1705 726 CDD TM_EGFR-like 282 313 - -
Clacu01g1705 726 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Clacu01g1705 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1705 726 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 54 712 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu01g1705 726 Gene3D Transferase(Phosphotransferase) domain 1 426 642 - -
Clacu01g1705 726 MobiDBLite consensus disorder prediction 697 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1705 Clacu-Chr1:29180050 Clacu11g0813 Clacu-Chr11:8049981 9.80E-78 dispersed
Clacu03g1095 Clacu-Chr3:20308184 Clacu01g1705 Clacu-Chr1:29180050 1.20E-46 dispersed
Clacu01g1705 Clacu-Chr1:29180050 Clacu08g1705 Clacu-Chr8:26616606 4.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73255 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1705 - - - 0.0