Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1732 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGCACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTTGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGAATGAGACGAGGTCATCTGAGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTGTGCTGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCGTTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCAACAGGAGCTACGTCTCCATTGCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCTATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCATCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCCCAATTACACAAGCTAACACCAAAACTGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTTGGAAGTGTATATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGATGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACCTTATCATATGAAGCCAGCGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACTGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCCACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTATCTCCTCCGCGCTCGGTTCCAAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCCGGCCTGCCTCCAGCTTTGCTCGCACCTTCAATCGATGAGCATTTGGCAAGGGTGGTAAAGTATCCGCGAAAGCACAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGAGCTTCTGGTCTGGAAGTCTACACCATACTGGGAGTTGAGAAACAATTTTGTATGCTGCTTTTTCCATTTTAGAGCTTCAGTAATGGCGACATCCACTGATCCTTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATAGTTCAATGTACAACTTCAAACTGAATTTGTAG 2619 46.89 MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNLNSAGGDGDCPLPSPKGWRGRGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQNETRSSERANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPCAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPTGATSPLHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASILSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTPITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGPPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGLPPALLAPSIDEHLARVVKYPRKHSFMTRSQTQMLRLVELLVWKSTPYWELRNNFVCCFFHFRASVMATSTDPSLVLAWENHHFHSSMYNFKLNL 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29492811 29498754 + ClG42_01g0173200.10 Clacu01g1732 241116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1732 872 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 150 678 IPR050538 -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 353 409 - -
Clacu01g1732 872 SUPERFAMILY Protein kinase-like (PK-like) 394 715 IPR011009 -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 13 39 - -
Clacu01g1732 872 Pfam Protein kinase domain 411 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1732 872 ProSiteProfiles Protein kinase domain profile. 410 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1732 872 SMART serkin_6 410 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1732 872 MobiDBLite consensus disorder prediction 291 311 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 213 229 - -
Clacu01g1732 872 FunFam Mitogen-activated protein kinase kinase kinase 5 407 708 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 135 152 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 703 722 - -
Clacu01g1732 872 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Clacu01g1732 872 MobiDBLite consensus disorder prediction 703 737 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 13 30 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 73 93 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 64 229 - -
Clacu01g1732 872 Gene3D Transferase(Phosphotransferase) domain 1 406 710 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 377 409 - -
Clacu01g1732 872 MobiDBLite consensus disorder prediction 170 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0468 Clacu-Chr1:4654657 Clacu01g1732 Clacu-Chr1:29492811 8.80E-97 dispersed
Clacu01g1732 Clacu-Chr1:29492811 Clacu05g0965 Clacu-Chr5:8561300 7.30E-96 dispersed
Clacu01g1732 Clacu-Chr1:29492811 Clacu08g1718 Clacu-Chr8:26694640 1.30E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73256 PF00069 Pkinase 2.80E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1732 - - - 0.0