Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1734 ATGAAGGATAACTCCTCCAAATATGTTGTTTTCTTGCTTATAAGCTTCTTTTTCTTGAATCAGCTCCTTCTGTCCTCACAACTTGATTATAGGTTCTATGATGCCTCTTGCCCCAACCTAACAAGGATTATAAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGGCTTCATTTTCATGATTGCTTTGTCAACGGTTGTGATGGATCATTGTTGCTTGATGACACTAGCACATTTAGGGGGGAGAAAAATGCATTGCCGAATATGAACTCAGTTCGAGGCTATGAAGTCATTGATAATATAAAGGCTGTCTTAGAGAAAGTCTGCCCATATGTTGTCTCATGTACTGATATAGTAACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGGGGACCATTTTGGCAAATTCCACTTGGTCGCCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTTGAGCCATTGGAGAATATCATGGCGAAATTCACTTCGAAAGGGTTAGATATGAAGGATGTTGTTGCTCTCTCAGGTGCACACACTTTCGGATTTGCTCGGTGCATGATGTTCAAGCACAGGCTGTTCAACTTCGATGGCACTGGAAATCCCGATCCAGAACTCGACGTCATGCTGCGACAGAACTTACAGAGCAATTGTCCAAATCAAGATGACTCCAACAACAAATTTGCCCCCTTGGATGCCTACACGATCAACCGGTTCGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCTCTCATGAAAGATAATACAACTGCTTCTTTGGTGGTGAACTACAGCAGGTATCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAATGGGGAGATTAGGAAGAATTGCAGGATGGTGAACTAG 984 44.31 MKDNSSKYVVFLLISFFFLNQLLLSSQLDYRFYDASCPNLTRIIRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFRGEKNALPNMNSVRGYEVIDNIKAVLEKVCPYVVSCTDIVTLAAREAVYLAGGPFWQIPLGRRDGTTASESEANQLPSPVEPLENIMAKFTSKGLDMKDVVALSGAHTFGFARCMMFKHRLFNFDGTGNPDPELDVMLRQNLQSNCPNQDDSNNKFAPLDAYTINRFDNVYYRNLVNKLGLLQSDQALMKDNTTASLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKNCRMVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29503881 29505418 + ClG42_01g0173400.10 Clacu01g1734 241118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1734 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PANTHER PEROXIDASE 72-RELATED 16 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Clacu01g1734 327 Pfam Peroxidase 48 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 Gene3D Peroxidase, domain 2 164 306 - -
Clacu01g1734 327 CDD secretory_peroxidase 29 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu01g1734 327 Gene3D - 31 327 - -
Clacu01g1734 327 FunFam Peroxidase 31 180 - -
Clacu01g1734 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1734 327 FunFam Peroxidase 164 306 - -
Clacu01g1734 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1734 Clacu-Chr1:29503881 Clacu02g2418 Clacu-Chr2:37159050 1.50E-89 dispersed
Clacu11g0922 Clacu-Chr11:8884020 Clacu01g1734 Clacu-Chr1:29503881 7.10E-54 dispersed
Clacu11g0924 Clacu-Chr11:8916384 Clacu01g1734 Clacu-Chr1:29503881 4.40E-54 dispersed
Clacu02g1929 Clacu-Chr2:32859701 Clacu01g1734 Clacu-Chr1:29503881 1.30E-70 transposed
Clacu03g0404 Clacu-Chr3:4475915 Clacu01g1734 Clacu-Chr1:29503881 8.20E-67 transposed
Clacu09g2287 Clacu-Chr9:37639997 Clacu01g1734 Clacu-Chr1:29503881 2.10E-58 transposed
Clacu01g1734 Clacu-Chr1:29503881 Clacu09g1794 Clacu-Chr9:32556546 5.70E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1734 K00430 - csv:101218459 616.305