Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1763 ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGCTCAATGTCTTCTGACCAAGAAAGACCGAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAAATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAAGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGGTGTGCTCCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1248 47.84 MDHSIPNNCDGNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENSSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYNISAPPDLQGLKNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLNGIDTGRPTETTELQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29780281 29782423 - ClG42_01g0176300.10 Clacu01g1763 241147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1763 415 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 335 IPR031066 GO:0005634(PANTHER)
Clacu01g1763 415 Coils Coil 211 231 - -
Clacu01g1763 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Clacu01g1763 415 FunFam Basic helix-loop-helix transcription factor 167 230 - -
Clacu01g1763 415 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Clacu01g1763 415 Gene3D - 167 231 IPR036638 GO:0046983(InterPro)
Clacu01g1763 415 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Clacu01g1763 415 MobiDBLite consensus disorder prediction 168 184 - -
Clacu01g1763 415 MobiDBLite consensus disorder prediction 98 184 - -
Clacu01g1763 415 MobiDBLite consensus disorder prediction 98 114 - -
Clacu01g1763 415 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Clacu01g1763 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1763 Clacu-Chr1:29780281 Clacu09g0937 Clacu-Chr9:8673962 2.50E-25 dispersed
Clacu04g1256 Clacu-Chr4:26676317 Clacu01g1763 Clacu-Chr1:29780281 2.80E-19 transposed
Clacu01g1763 Clacu-Chr1:29780281 Clacu05g2193 Clacu-Chr5:30540350 3.40E-06 wgd
Clacu01g1763 Clacu-Chr1:29780281 Clacu08g1766 Clacu-Chr8:27095610 7.90E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47047 PF00010 HLH 4.90E-14 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1763 - - - 0.0