Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1765 ATGTGGGATCTGAACGATTGGCCTGATGCGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGTCGTTGGGAGTCGCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGACACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1488 48.45 MWDLNDWPDAREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRTQTAVGAADQPNSQILLHNHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29813456 29815969 - ClG42_01g0176500.10 Clacu01g1765 241149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1765 495 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 FunFam AP2-like ethylene-responsive transcription factor 133 192 - -
Clacu01g1765 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 355 - -
Clacu01g1765 495 MobiDBLite consensus disorder prediction 1 63 - -
Clacu01g1765 495 MobiDBLite consensus disorder prediction 105 134 - -
Clacu01g1765 495 FunFam AP2-like ethylene-responsive transcription factor 225 285 - -
Clacu01g1765 495 CDD AP2 134 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677(InterPro)
Clacu01g1765 495 CDD AP2 225 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 SMART rav1_2 134 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 SMART rav1_2 226 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 MobiDBLite consensus disorder prediction 290 335 - -
Clacu01g1765 495 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 MobiDBLite consensus disorder prediction 48 62 - -
Clacu01g1765 495 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677(InterPro)
Clacu01g1765 495 Pfam AP2 domain 225 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 Pfam AP2 domain 134 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1765 495 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1765 Clacu-Chr1:29813456 Clacu10g2032 Clacu-Chr10:33797590 1.30E-89 dispersed
Clacu01g1765 Clacu-Chr1:29813456 Clacu02g1262 Clacu-Chr2:25234694 1.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47048 PF00847 AP2 3.40E-10 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1765 K09284 - csv:101214724 763.066