Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1770 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTTACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTCAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTCTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 894 53.02 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSLPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29884634 29885742 - ClG42_01g0177000.10 Clacu01g1770 241154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1770 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1770 297 MobiDBLite consensus disorder prediction 100 127 - -
Clacu01g1770 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1770 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 285 IPR044810 GO:0003700(InterPro)
Clacu01g1770 297 FunFam WRKY transcription factor 65 208 285 - -
Clacu01g1770 297 Gene3D WRKY domain 208 285 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1770 297 MobiDBLite consensus disorder prediction 162 186 - -
Clacu01g1770 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1770 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g1770 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1770 Clacu-Chr1:29884634 Clacu05g2853 Clacu-Chr5:35743055 1.10E-54 dispersed
Clacu02g0823 Clacu-Chr2:9513234 Clacu01g1770 Clacu-Chr1:29884634 7.30E-85 transposed
Clacu01g1770 Clacu-Chr1:29884634 Clacu05g2214 Clacu-Chr5:30691928 1.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47050 PF03106 WRKY 3.80E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1770 - - - 0.0