Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1774 ATGAATAAACTCAGTTGGGAATTGAATTACATCATCCATCCAAACAGATTAAACAAACGTGAAATTAGCCAATCGATCGCCAATTTTATCAAAGTTCTTCACGCCCTACACGACCTTCGCGGAGATCTTAACTGGACGCGCCATCTTCTTCGCTTCCTTTCCTTCCCAATCATTGGTTCCATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAATAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCCAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCCGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAGATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCGTTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAAGGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCACTCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGTGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGAACCTGCCGTAATACAACCATCAGCCATTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 2016 40.87 MNKLSWELNYIIHPNRLNKREISQSIANFIKVLHALHDLRGDLNWTRHLLRFLSFPIIGSMRSSPSFLFVADNKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTRSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSVTISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEEKDDDVFSDSDEENGDIKTSLAHSTSGTGNGTSKADHSSTTIASGRIVSLAHDTSCLTLGNEKNSQPNAPKEPAVIQPSAIEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29928768 29934033 + ClG42_01g0177400.10 Clacu01g1774 241158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1774 671 MobiDBLite consensus disorder prediction 128 147 - -
Clacu01g1774 671 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 279 334 - -
Clacu01g1774 671 Gene3D Protein tyrosine phosphatase superfamily 204 382 IPR029021 -
Clacu01g1774 671 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 314 353 IPR000387 GO:0016311(InterPro)
Clacu01g1774 671 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 204 382 - -
Clacu01g1774 671 ProSitePatterns Tyrosine specific protein phosphatases active site. 316 326 IPR016130 GO:0016311(InterPro)
Clacu01g1774 671 MobiDBLite consensus disorder prediction 520 596 - -
Clacu01g1774 671 MobiDBLite consensus disorder prediction 575 596 - -
Clacu01g1774 671 ProSiteProfiles C2 tensin-type domain profile. 386 513 IPR014020 -
Clacu01g1774 671 Pfam PTEN2, C2 domain 386 514 - -
Clacu01g1774 671 SMART PTEN_C2_2 384 512 IPR014020 -
Clacu01g1774 671 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 206 592 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Clacu01g1774 671 ProSiteProfiles Phosphatase tensin-type domain profile. 219 379 IPR029023 -
Clacu01g1774 671 MobiDBLite consensus disorder prediction 89 113 - -
Clacu01g1774 671 CDD PTP_PTEN 229 375 IPR045101 GO:0016791(InterPro)
Clacu01g1774 671 MobiDBLite consensus disorder prediction 525 539 - -
Clacu01g1774 671 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 227 376 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1774 Clacu-Chr1:29928768 Clacu10g1527 Clacu-Chr10:28575918 3.80E-36 dispersed
Clacu01g1774 Clacu-Chr1:29928768 Clacu02g0667 Clacu-Chr2:6651261 3.90E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1774 K01110 - csv:101213277 1047.34