Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1784 ATGGATGAACATAGCAAAGATCCTGTCATCAAGGAAAGGAAGAACAAACATGTGGGTGTTTTTGTGGGCTTGGCTGTTGGTGGTTTTGGTTTGATCTGCATTTTAGGCTTTGGGATATTTTTTGGTCTCAAATGGAGTAAGCCAAAAACCGAGGAAGCTTCACAAACACACACAAAGTGGTCTCCATGGCCTTTATTTGGAGGTCGGAGCACTCACAGCAACTCAACCAGCTCTCCCATCCCCAACTTGAATCTTGGGTTGAAGTTCTCTCTTGCTGAAATCAAAACTGCCACAGACAATTTCAATAAGAAATTCCTTGTTGGTGAGGGTGGTTTTGGGAAAGTTTATAAGGGAGTTATGAGAAATGGCATGAGAGTAGCAGTCAAGAGAAGCCAACCAGGGGCTGGACAAGGTATTTCTGAGTTCGAGAGAGAAATCACGATATTGTCGCGAATTCAACATCGGCACCTCGTTTCGTTTATCGGGTATTGCAATGAGGGACTGGAGATGATTTTGGTTTATGAATTCTTGGAGAAAGGAACTCTTAGGGAGCATCTTTACAACTCAAACTTTCCTCCTCTGTCTTGGAAGAAAAGGCTAGAAATTTGCATTGATGCAGCTAAAGGCTTGCATTACCTACACAAAGGCTTATCCATGGGAATCATTCACCGTGATGTAAAATCAACCAACATTTTGCTTGATGAGAACCTTGTCGCTAAAGTTTCCGACTTTGGCCTTTCAACAGCAAGTTCCCTCGACGAAACTCATGTAAGCACAGATATTAAAGGGACTATCGGGTATCTCGATCCCGAGTATTTTCGAACCCGACAATTGACACAGAAATCTGAGTCTACTCATTTGGGGTACTTCTTCTTGAGATTTTGTGTGCAAGACTAG 897 42.7 MDEHSKDPVIKERKNKHVGVFVGLAVGGFGLICILGFGIFFGLKWSKPKTEEASQTHTKWSPWPLFGGRSTHSNSTSSPIPNLNLGLKFSLAEIKTATDNFNKKFLVGEGGFGKVYKGVMRNGMRVAVKRSQPGAGQGISEFEREITILSRIQHRHLVSFIGYCNEGLEMILVYEFLEKGTLREHLYNSNFPPLSWKKRLEICIDAAKGLHYLHKGLSMGIIHRDVKSTNILLDENLVAKVSDFGLSTASSLDETHVSTDIKGTIGYLDPEYFRTRQLTQKSESTHLGYFFLRFCVQD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30041373 30042269 - ClG42_01g0178400.10 Clacu01g1784 241168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1784 298 SMART serkin_6 101 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1784 298 Gene3D Phosphorylase Kinase; domain 1 68 176 - -
Clacu01g1784 298 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524(InterPro)
Clacu01g1784 298 SUPERFAMILY Protein kinase-like (PK-like) 75 282 IPR011009 -
Clacu01g1784 298 FunFam receptor-like protein kinase FERONIA 68 176 - -
Clacu01g1784 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1784 298 Pfam Protein tyrosine and serine/threonine kinase 107 283 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1784 298 Gene3D Transferase(Phosphotransferase) domain 1 177 296 - -
Clacu01g1784 298 ProSiteProfiles Protein kinase domain profile. 101 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1784 298 PANTHER OS01G0750732 PROTEIN 28 283 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1784 Clacu-Chr1:30041373 Clacu11g1513 Clacu-Chr11:26300242 2.00E-133 dispersed
Clacu01g1784 Clacu-Chr1:30041373 Clacu05g0980 Clacu-Chr5:8722149 9.00E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73261 PF07714 PK_Tyr_Ser-Thr 8.00E-39 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1784 - - - 0.0