Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g1786 | ATGGATTTAGACACTTACTTCCTTTACTCTTCCCTCTCTCTTTTCTTTCTTCTTCTTGCTTTCAATCTCATTCGTCGATCACTTCGAGTTCGCAATAACTTACCGCCGAGTCCGCCTTCTCTTCCGATCATCGGTCATCTCCATCTCTTGAAAAAGCCACTACACCGAAATTTCCAAAACCTCTCTGCCAAATATGGCCCTGTTATGTCTCTCCGCCTCGGATCTAAGCTCGCAGTCGTTATATCCTCGTCGGCGGCGGTGGAGGAGTGCTTCACTAAAAACGACGTTGTTCTCGCCAACCGTCCGCGTTTGCTCATTGGAAAATACATCGGCTATAACTACACTACCATGATTGCGGCTCCGTACGGCGACCACTGGCGGAACCTTCGTCGAATAGGCGCCATTGAAATCTTCTCTTTATCTCGAATCAACGAATTCGCCGATATCCGGAGGGATGAAGTGAATCGATTGGTGCGAAAACTATCGCATAATTCGATTCATCAGTTCTCGAAAGTAGAAATTCAAACGGCGATGTCGGAGCTGACGTTCAACATCTCAATGAGAATGGCGGCCGGGAAGAGGTATTACGGCGAGGACGTGACGAACGAAGAAGAGGCGAGGAGATTCAGGGAGTTAATTAAAGAGATTGTGGCGATAGGAGGAGTATCAAATCCAGGGGATTTCTTACCCATAATGAACTGGATCTCGAATGGTTTTGAAAGGAAATTAATTCAATTGGGGAAGAAAGTGGATGCGTTCTTGCAGGGGCTAATTGATGAACACCGAAGGAAGAAGGAAGAAGGAAGGAACACGATGATCGACCACTTGCTTTCTCTACAAGAATCGGAACCCGATCACTATAACGATCAAATAATCAAGGGATTTATAATGGTATTACTGATTGCGGGGTCCGACACATCAGCTGTGACAATGGAATGGGCCTTGTCTCATCTACTAAACAATCCCCAAGTGTTAAGGAAGGCAAAAGACGAAGTAGACACTCAAATTGGAGGAGAACGACTCATGGAAGAACCAGACATTTCCAAACTACCTTATCTTCAAAAAATCATCTCTGAGACTCTTCGGCTGAATCCTGCGGCACCCATGTTGGTTCCCCATTATGCAGCCAATGACTGCACAATATGTGGATACGATGTGCCGCGCGGTACGATGGTACTAGTCAATGCCTGGGCCATACATAGGGATTCAAATGAATGGGAGGATCCCATAAGTTTCAAACCAGAGCGATACCAAAAGTCAGAAGCCGTGGAGGTACACAAGTTGTTGCCTTTTGGAGTAGGGAGACGAGCTTGTCCTGGGTCTGCCATGGCGCACAGAGTGATGGGTCTAACTTTGGCAACTCTGATTCAATGCTTTGAGTGGGAGAAGATTGGAGAAGAAGACATCGATATGAGTGAGCGGAGTGGTGCCACAATGACCAAGATGGTGCCACTGGAGGCCATGTGCAAAGCTCGTCCCATCATCAACAACCTTCTTCACTAA | 1503 | 46.71 | MDLDTYFLYSSLSLFFLLLAFNLIRRSLRVRNNLPPSPPSLPIIGHLHLLKKPLHRNFQNLSAKYGPVMSLRLGSKLAVVISSSAAVEECFTKNDVVLANRPRLLIGKYIGYNYTTMIAAPYGDHWRNLRRIGAIEIFSLSRINEFADIRRDEVNRLVRKLSHNSIHQFSKVEIQTAMSELTFNISMRMAAGKRYYGEDVTNEEEARRFRELIKEIVAIGGVSNPGDFLPIMNWISNGFERKLIQLGKKVDAFLQGLIDEHRRKKEEGRNTMIDHLLSLQESEPDHYNDQIIKGFIMVLLIAGSDTSAVTMEWALSHLLNNPQVLRKAKDEVDTQIGGERLMEEPDISKLPYLQKIISETLRLNPAAPMLVPHYAANDCTICGYDVPRGTMVLVNAWAIHRDSNEWEDPISFKPERYQKSEAVEVHKLLPFGVGRRACPGSAMAHRVMGLTLATLIQCFEWEKIGEEDIDMSERSGATMTKMVPLEAMCKARPIINNLLH | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30043929 | 30046656 | - | ClG42_01g0178600.10 | Clacu01g1786 | 241170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g1786 | 500 | FunFam | Cytochrome P450 family protein | 26 | 495 | - | - | |
| Clacu01g1786 | 500 | CDD | CYP81 | 66 | 485 | - | - | |
| Clacu01g1786 | 500 | SUPERFAMILY | Cytochrome P450 | 35 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PANTHER | CYTOCHROME P450 82C3-RELATED | 16 | 492 | IPR050651 | - | |
| Clacu01g1786 | 500 | Pfam | Cytochrome P450 | 35 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 428 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 395 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 438 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | E-class P450 group I signature | 354 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 431 | 440 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | P450 superfamily signature | 438 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | P450 superfamily signature | 429 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1786 | 500 | Gene3D | Cytochrome P450 | 20 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1786 | Clacu-Chr1:30043929 | Clacu02g0848 | Clacu-Chr2:10046465 | 8.60E-166 | dispersed | |
| Clacu01g1782 | Clacu-Chr1:30030663 | Clacu01g1786 | Clacu-Chr1:30043929 | 1.60E-212 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g1786 | K13260 | - | csv:101215449 | 871.692 |