Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1813 ATGATGCAATTCAGCGAGACACCCCCACGGTTGCACCAAACGACCACTACTACAACAAGGATTATTCCTCCTTCATTTCCAGAGATGTCGATGAATAATAAAAACCAAATTACAACAACGGGGCAGTTTCGAAGTAGGCGGCCATGGCCTGGTTTATTTCCTTGCTCATCCAAAGCTTTAGGGACTTGCTTGGGAGATGCCAATTGTATGGAACAATTGTTAGTTCATTGTGCCAACGCCATTGAAACCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGCCTCACTTCCGCTTTCCTACGCGCTCTCGTCACACGCGCCACCAACACCGGTAACTGCAAGATCCTAGCCGCTATCACCACCGCATTCTCCTCCTCACTCACCACACACACCTTCTCCCTTATGGACCTCGCCGCCTTCGTCGACTTAACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAATGTCGCCATTCTCGACGCCATCGAGGGTTACTCCGTCGTACATGTCGTGGATTTCAGCTTGATGCATTGCATGCAAATCCCTACTTTAATCGACGCCATTGCTACACGATTTGAGGTTCCTCCGTTGTTGAAACTCACGACTGTAGCTGTTGTTGCCGTTAAAGACGCATCGCCTATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTAGTGAACTTCGCCAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCGTCTTGTCATACAGACGGTTTCGCCAGTTTAATTGAACAAATCCGAATGCAAAACTTAATTTACGGACCTGAAAATAACGAAGCACTCGTTTTTAATTGTCACATGATGCTTCATTACATCCCTGAAGAAACATTAAACCCAAACCCATCTCCCAATTTCGACATGTCGTCCACTTCAATTCGTTCCATGTTTCTCAAGGCAATCCGTAGTTTAGACCCAACGATTGTGGTTTTAGTAGACGAAGATGCGGATTTCACTTCAAGCAAATTGGTTACACGATTGAGATCGGCGTTTAATTACCTATGGATTCCTTACGACTCCATGGATTCGTTTCTTCCGAGAAGCAGCAAGCAGAGGGAATGGTATGAAGCCGACATTTGTTGGAAGATTGAGAATGTAATTGCACAGGAAGGGATTCAACGAGTTCAAAGATTGGAACCGAAGGGACGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGGTTCCGTTTGGAGAGGACGCCGTTACGGAGGTGAAGGGGATGCTTGACGAGCATGCAGGGGGATGGGGGTTGAAGAAAGAAGAGGACCACCTGCTGCTCACGTGGAAAGGGCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTGCTAA 1410 48.23 MMQFSETPPRLHQTTTTTTRIIPPSFPEMSMNNKNQITTTGQFRSRRPWPGLFPCSSKALGTCLGDANCMEQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNCKILAAITTAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANVAILDAIEGYSVVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKDASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFASLIEQIRMQNLIYGPENNEALVFNCHMMLHYIPEETLNPNPSPNFDMSSTSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAQEGIQRVQRLEPKGRWVQRMVNAKFRGVPFGEDAVTEVKGMLDEHAGGWGLKKEEDHLLLTWKGHDVVFATAWVPC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30296991 30298400 - ClG42_01g0181300.10 Clacu01g1813 241197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1813 469 ProSiteProfiles GRAS family profile. 61 467 IPR005202 -
Clacu01g1813 469 Pfam GRAS domain family 70 466 IPR005202 -
Clacu01g1813 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 466 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1813 Clacu-Chr1:30296991 Clacu02g0166 Clacu-Chr2:1605443 6.70E-96 dispersed
Clacu01g1813 Clacu-Chr1:30296991 Clacu03g0137 Clacu-Chr3:1501243 1.80E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47052 PF03514 GRAS 4.40E-91 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1813 - - - 0.0