Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1814 ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTCGTCGCTAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGATCTAGATCTCCGCTTGACGCCTACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA 708 52.82 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30315426 30316225 - ClG42_01g0181400.10 Clacu01g1814 241198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1814 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - GO:0010468(PANTHER)
Clacu01g1814 235 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Clacu01g1814 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Clacu01g1814 235 MobiDBLite consensus disorder prediction 156 171 - -
Clacu01g1814 235 MobiDBLite consensus disorder prediction 146 218 - -
Clacu01g1814 235 MobiDBLite consensus disorder prediction 185 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1814 Clacu-Chr1:30315426 Clacu05g1330 Clacu-Chr5:13981906 1.30E-44 dispersed
Clacu01g1814 Clacu-Chr1:30315426 Clacu05g2248 Clacu-Chr5:30895015 6.00E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47053 PF03195 LOB 4.00E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1814 - - - 0.0