Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g1826 | ATGGAAAATACAAATCTTAATAGGAAGAATGAGGAGCACATGGTGTCAAGTGCTAAACAAATCAAGAAATTCTTGCAAGGCGCATTCACAATCGTTATCGTATTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGTGGATTCCATTTTCAAGTGACAGCTGAGCCTTCCTCACGCACGCTGCCTTTGCTTTCCACATCCTCTTCCTGTCGTATCTCAGCCTTTTTTTTTCAGTTGCCACTGCCATATCAGAGAAGAATTCCAGGTGGATGCACGGTCATTGTTTACGAAACTACCTCCGCCACCTCCTCCGACCGACCTTTTTCGACGCTCTTTTCAATTTCAGTCTTTTCCGAGATGGTCACGTTGCAATCGGCGCGACCGCTGGTTCGCATGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACCGGAGCGGAGTTGTGGAGGTTGGGGGTTCTGTTGCGATGCGGTTACTACTAGTGTCTTACAGCCATTTAAAGCGGCGACGAGCAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGACTATGAGACCTCAAGTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGTCAAGGCTTACATTCAAGAAGAAAACTGACCTACATCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAACCTGAAGATCGTGCAGAAAACATACGGAGAGTTGGTGAGGTAGCAAGCCTCTTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGCCGTGCCTTGCTGGCTGAAGGTGATTTTATTGAGGTTTTCCTTGATGTACCACTTAATATATGTGAAGCCCGAGATCCAAAGGGTCTGTATAAACTGTGTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCCGAGATTGTATTGCAATATAAAGAAGGGATGTGCTCGTCCGCTATTGACATGGCGGAAATAGTGATTTCATATTTAGAAGAGAGAGGATTCGGAAGACGACATGTCGGCAAAAAGTCAGCTTCGGACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGGAGCCCTAATTGCAGAGTTCGACGCTCTAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATGTAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCACACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA | 3108 | 43.95 | MENTNLNRKNEEHMVSSAKQIKKFLQGAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPSSRTLPLLSTSSSCRISAFFFQLPLPYQRRIPGGCTVIVYETTSATSSDRPFSTLFSISVFSEMVTLQSARPLVRMYEYRPLISPSLGRLKPANVAVNNAIGPERSCGGWGFCCDAVTTSVLQPFKAATSNCSAIHGKGCHDYETSSGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYILDGDNIRHGLNSDLSFEPEDRAENIRRVGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLNICEARDPKGLYKLCRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGMCSSAIDMAEIVISYLEERGFGRRHVGKKSASDLVWILSWCGRRRSPNCRVRRSKGQRKMGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTCNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW | 1035 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30416704 | 30425962 | - | ClG42_01g0182600.10 | Clacu01g1826 | 241210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g1826 | 1035 | CDD | RING-Ubox_PPIL2 | 481 | 553 | IPR026951 | - | |
| Clacu01g1826 | 1035 | SMART | Ubox_2 | 482 | 544 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Clacu01g1826 | 1035 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 484 | 539 | - | - | |
| Clacu01g1826 | 1035 | NCBIfam | adenylyl-sulfate kinase | 213 | 383 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Clacu01g1826 | 1035 | Gene3D | - | 773 | 958 | IPR029000 | - | |
| Clacu01g1826 | 1035 | Gene3D | - | 201 | 405 | IPR027417 | - | |
| Clacu01g1826 | 1035 | CDD | cyclophilin_RING | 793 | 951 | - | - | |
| Clacu01g1826 | 1035 | SUPERFAMILY | Cyclophilin-like | 793 | 959 | IPR029000 | - | |
| Clacu01g1826 | 1035 | MobiDBLite | consensus disorder prediction | 951 | 973 | - | - | |
| Clacu01g1826 | 1035 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 828 | 845 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Clacu01g1826 | 1035 | SUPERFAMILY | RING/U-box | 480 | 547 | - | - | |
| Clacu01g1826 | 1035 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 797 | 944 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | Coils | Coil | 951 | 971 | - | - | |
| Clacu01g1826 | 1035 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 891 | 903 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 807 | 822 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 904 | 919 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 833 | 845 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 876 | 891 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 774 | 958 | - | - | |
| Clacu01g1826 | 1035 | MobiDBLite | consensus disorder prediction | 946 | 1035 | - | - | |
| Clacu01g1826 | 1035 | Pfam | Adenylylsulphate kinase | 230 | 379 | - | - | |
| Clacu01g1826 | 1035 | ProSiteProfiles | U-box domain profile. | 478 | 551 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Clacu01g1826 | 1035 | MobiDBLite | consensus disorder prediction | 1006 | 1023 | - | - | |
| Clacu01g1826 | 1035 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 229 | 402 | IPR027417 | - | |
| Clacu01g1826 | 1035 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 483 | 539 | IPR013083 | - | |
| Clacu01g1826 | 1035 | PANTHER | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE | 204 | 405 | - | GO:0000103(PANTHER)|GO:0004020(PANTHER) | |
| Clacu01g1826 | 1035 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 793 | 944 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Clacu01g1826 | 1035 | CDD | APSK | 233 | 379 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) | |
| Clacu01g1826 | 1035 | Hamap | Adenylyl-sulfate kinase [cysC]. | 229 | 404 | IPR002891 | GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1826 | Clacu-Chr1:30416704 | Clacu10g1335 | Clacu-Chr10:26338353 | 3.80E-75 | dispersed | |
| Clacu05g0243 | Clacu-Chr5:2109428 | Clacu01g1826 | Clacu-Chr1:30416704 | 1.80E-48 | transposed | |
| Clacu05g1964 | Clacu-Chr5:28782485 | Clacu01g1826 | Clacu-Chr1:30416704 | 1.30E-37 | transposed | |
| Clacu01g1826 | Clacu-Chr1:30416704 | Clacu10g1021 | Clacu-Chr10:21939926 | 5.90E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g1826 | K10598 | - | csv:101204462 | 1066.6 |