Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1849 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCTCATCTCAGTTTAACTACGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTACAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGACTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTAGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCATTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1890 45.45 MNNVNGNNCNWLGFSVSPNVNMELSSSSATTVSPSIPANLFHSSSQFNYGICYGVDAEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMTENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNSNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30619421 30622548 + ClG42_01g0184900.10 Clacu01g1849 241233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1849 629 Gene3D AP2/ERF domain 395 455 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 Gene3D AP2/ERF domain 292 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 ProSiteProfiles AP2/ERF domain profile. 395 453 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 Coils Coil 360 380 - -
Clacu01g1849 629 MobiDBLite consensus disorder prediction 489 512 - -
Clacu01g1849 629 FunFam AP2-like ethylene-responsive transcription factor 394 455 - -
Clacu01g1849 629 Pfam AP2 domain 293 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 Pfam AP2 domain 396 446 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 PRINTS Ethylene responsive element binding protein signature 294 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 PRINTS Ethylene responsive element binding protein signature 435 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 MobiDBLite consensus disorder prediction 474 512 - -
Clacu01g1849 629 FunFam AP2-like ethylene-responsive transcription factor ANT 292 361 - -
Clacu01g1849 629 SMART rav1_2 293 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 SMART rav1_2 395 459 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 CDD AP2 292 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 CDD AP2 394 455 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 SUPERFAMILY DNA-binding domain 292 361 IPR016177 GO:0003677(InterPro)
Clacu01g1849 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 220 521 - -
Clacu01g1849 629 ProSiteProfiles AP2/ERF domain profile. 293 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1849 629 SUPERFAMILY DNA-binding domain 394 454 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1849 Clacu-Chr1:30619421 Clacu05g2858 Clacu-Chr5:35791000 7.10E-133 dispersed
Clacu02g2381 Clacu-Chr2:36835893 Clacu01g1849 Clacu-Chr1:30619421 4.90E-91 transposed
Clacu06g1443 Clacu-Chr6:25303807 Clacu01g1849 Clacu-Chr1:30619421 4.50E-95 transposed
Clacu10g0767 Clacu-Chr10:11434103 Clacu01g1849 Clacu-Chr1:30619421 5.30E-86 transposed
Clacu01g1849 Clacu-Chr1:30619421 Clacu08g1833 Clacu-Chr8:27592094 2.30E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47061 PF00847 AP2 1.20E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1849 K09285 - csv:101203323 1157.51