Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1868 ATGTTTTTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCCCTTCCTTCTCTGCCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTTACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGTCGCCGCCCACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCACGTCATTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACCATTTCCCCTGACCTTGCGTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGTATCTTAATCTCTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGACCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTCCAATACCGCCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTTTACATTGGTTACTACAACATCTTCGTCGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGACCGGAAAGTTTCCGCCGGAGCTGGGAAAGTTGCAGAAACTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACTTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTGTCTGGTTCCATCCCAGAATCATTGGGGAATTGTATTTCACTTAAGCGTATACTTCTGTGGGGAAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCAAGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCGGTCAACCTTCTTCAGATAAGTTTATCTAATAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTACAATTGTGCCAGAGATAAGTGAGTGTAAACACTTAATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATCCCCGACCATATTACCAACATGAAGTTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAACATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGACAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGATGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTGGTTTAGTTGCACTCACAGTTGCATTGATCTTCAAAGTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCTAGTGGTGATCAGATCACTCTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTCGTGACCACGGATTCAATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGTCACATTGTTAGATTATTGGGCCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTTTGGGATACGAGGTACAAGATAGCCATTGGAACTGCGAATGGACTCTGCTATCTTCACCACCATTGCTCGCCGCCCATTGTTCATCGAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGAAGCTCAAATTGCCAATTCCGGGCTTGCAAAGTTCTTAGAAGATTCAAGGACATCGGATAAGTCAGCTACCGAGCCAGAGCATGCCGACACACAGAATGCCGATGAGAAGTGGGATGTATATAGCTTCGGTGTCATCCTATTGGAACTCGTTAGCGGTAGGAATCCAGTCGGAGAACTAAGCGACAGTGTCGACATAGTTCAATGGGTTAGAAACATGTCAGTTTCAGAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTCCCCCTTGACGAAGTGATGCACGTGCTCAATGTTGCCATGCTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACGATGCGGGAAGTCGTCCGGATCTTAACTGAGCATCAGCAACAATCATTCTCGAAGGAGAATGAAGATACATAA 2898 45.62 MFFLLVFVLLQLHFSPSFSAFLPESQALLSLKSSISYDPRSSLSSWNAVAAHCTWFGVTCDARRHVIALHLSSLDLAGTISPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQYLNLSSNVLNGSIPREFSQLKNLQVLDVYNNNLTGDFPRVVTEMTNLRHLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGNLTKLRELYIGYYNIFVGGIPATIGNLSELVRLDAASCGLTGKFPPELGKLQKLTELYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLQDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPDHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVLASNHQEHMKGSLSTPLRLLLVFGFFFGLVALTVALIFKVRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITLKRLPKMSNGCSRDHGFNAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFEAQIANSGLAKFLEDSRTSDKSATEPEHADTQNADEKWDVYSFGVILLELVSGRNPVGELSDSVDIVQWVRNMSVSEKEEIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSFSKENEDT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30804642 30807764 - ClG42_01g0186800.10 Clacu01g1868 241252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1868 965 SMART LRR_sd22_2 207 234 - -
Clacu01g1868 965 SMART LRR_sd22_2 135 164 - -
Clacu01g1868 965 SMART LRR_sd22_2 256 287 - -
Clacu01g1868 965 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 958 - -
Clacu01g1868 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 953 IPR050647 -
Clacu01g1868 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Clacu01g1868 965 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 Pfam Leucine Rich Repeat 354 374 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 Pfam Leucine Rich Repeat 377 399 IPR001611 GO:0005515(InterPro)
Clacu01g1868 965 SUPERFAMILY L domain-like 351 611 - -
Clacu01g1868 965 Gene3D Ribonuclease Inhibitor 176 275 IPR032675 -
Clacu01g1868 965 Gene3D Ribonuclease Inhibitor 23 175 IPR032675 -
Clacu01g1868 965 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Clacu01g1868 965 Gene3D Phosphorylase Kinase; domain 1 659 764 - -
Clacu01g1868 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 177 - -
Clacu01g1868 965 Pfam Protein tyrosine and serine/threonine kinase 688 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1868 965 SMART LRR_typ_2 111 135 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 471 495 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 352 375 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 256 279 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 567 590 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 327 351 IPR003591 -
Clacu01g1868 965 SMART LRR_typ_2 159 183 IPR003591 -
Clacu01g1868 965 Gene3D Ribonuclease Inhibitor 276 350 IPR032675 -
Clacu01g1868 965 SUPERFAMILY RNI-like 69 411 - -
Clacu01g1868 965 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1868 965 SUPERFAMILY Protein kinase-like (PK-like) 681 950 IPR011009 -
Clacu01g1868 965 Gene3D Ribonuclease Inhibitor 351 616 IPR032675 -
Clacu01g1868 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Clacu01g1868 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Clacu01g1868 965 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
Clacu01g1868 965 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1868 Clacu-Chr1:30804642 Clacu10g0808 Clacu-Chr10:13816678 9.20E-23 dispersed
Clacu01g1868 Clacu-Chr1:30804642 Clacu01g1869 Clacu-Chr1:30820162 9.80E-25 tandem
Clacu01g2679 Clacu-Chr1:36892367 Clacu01g1868 Clacu-Chr1:30804642 2.00E-91 transposed
Clacu05g1979 Clacu-Chr5:28898855 Clacu01g1868 Clacu-Chr1:30804642 1.30E-96 transposed
Clacu10g0683 Clacu-Chr10:9572979 Clacu01g1868 Clacu-Chr1:30804642 1.70E-96 transposed
Clacu01g1868 Clacu-Chr1:30804642 Clacu11g1674 Clacu-Chr11:27981494 4.70E-59 wgd
Clacu01g1868 Clacu-Chr1:30804642 Clacu08g1353 Clacu-Chr8:23572736 5.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73264 PF07714 PK_Tyr_Ser-Thr 4.60E-37 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1868 - - - 0.0