Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1869 ATGCGTCTTCTTCTTCTTCTCCTTTGTCTTCTGCAACTCCACATTCATCACTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCTCTTCTCTCCTTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTCTCCTCATGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACCTGCGATCTTCGTCGCCATGTCACTGCCTTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCCCTTTCCCCTGATGTTGCCTTTCTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGACTTTTCCGGTCCAATCCCCCCGGAGATTTCTTCAGTCTCTTCGCTTCGGCTCCTTAACCTGTCTAACAATGTGTTCGATGGGTCGTTCCCTTCACGGCTTTCGCAGCTCCAGAATCTCCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTCCCCATTGTGGTCACGGAAATGTCGAGCCTCCGCCATCTGCATTTGGGTGGAAATTTCTTTTCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATACCGCCGGAGATCGGAAACCTCACGAACCTTCACGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAATTTGTCGAAGTTGGTACGGTTGGACGCTGCGAACTGTGGTCTGTCTGGCCGGATTCCCCCGGAGCTCGGAAAGCTGCAGAATCTCGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAACAGCTTGAAATCTTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGCCTCGTTCGCCCAGTTGAAGAACTTAACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACATGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGATCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCGCTGAATCGCATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCAAAGCTCTCTCAGGTGGAGTTACAGGACAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCGATCTCATTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGACTCACCGGGTCAATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTACTTGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGACGGTTACAGCAACTTTCGAAGATAGATTTCAGTAACAATAAGCTGTCGGGTCCAATCGCGCCGGAGGTTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACCTGAATCTCTCAAAAAACCATTTAGTCGGCGGAATCCCTGCTTCCATATCCAGCATGCAGAGTTTAACCTCCGTTGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAGGGCCCCCTCTCTGCTTCTCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGTTAAAGAGAGCCAGCGAGTCTCGAGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCCGGAATTGTGTATAAAGGGGCCATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGAAGGATTCGTCATCGACATATTGTAAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGTTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCTGCTAAAGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCGATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACGCTAAAAGTTGACGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAGCTTGTTAGTGGAAGAAAACCGGTCGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGCAGTGAAAATCCTTGATCCAAGGCTGTCCTCCGTGCCTCTCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTTGAGGAACAGGCGGTTGAGCGTCCGACAATGCGGGAAGTGATCCAAATCCTATCAGAGATTCCTCAGCCACCATGTTCAAAACAGGGAGGAGATTCAACACTCCCCAACTCCTCACCACCCCCACCACCACCACCAGCTGCCGATTTAGACCTTCCAACAACAGGAGCCAAGAACAAAAAAGACCATCAGCAGCAGCAGCAGCCGCCACCAGATCTTCTTAGCATTTGA 3057 48.05 MRLLLLLLCLLQLHIHHSLSARVSEYRALLSFKTSITGDPKSSLSSWNASTSHCTWFGVTCDLRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANDFSGPIPPEISSVSSLRLLNLSNNVFDGSFPSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMSSLRHLHLGGNFFSGRIPPEVGRMQSLEYLAVSGNELSGPIPPEIGNLTNLHELYIGYFNAYDGGIPAEIGNLSKLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGELNSLKSLDLSNNMLVGEIPASFAQLKNLTLLNLFRNKLHGAIPSFIGDMPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEVSQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEAVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKQGGDSTLPNSSPPPPPPPAADLDLPTTGAKNKKDHQQQQQPPPDLLSI 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30820162 30823567 - ClG42_01g0186900.10 Clacu01g1869 241253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1869 1018 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Clacu01g1869 1018 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1869 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 976 - -
Clacu01g1869 1018 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Clacu01g1869 1018 MobiDBLite consensus disorder prediction 1001 1018 - -
Clacu01g1869 1018 SUPERFAMILY L domain-like 298 614 - -
Clacu01g1869 1018 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Clacu01g1869 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Clacu01g1869 1018 MobiDBLite consensus disorder prediction 964 1018 - -
Clacu01g1869 1018 Gene3D Ribonuclease Inhibitor 221 374 IPR032675 -
Clacu01g1869 1018 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Clacu01g1869 1018 SMART LRR_typ_2 329 353 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 112 136 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 354 377 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 569 592 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 160 184 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 497 521 IPR003591 -
Clacu01g1869 1018 SMART LRR_typ_2 281 304 IPR003591 -
Clacu01g1869 1018 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1869 1018 SMART serkin_6 689 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1869 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Clacu01g1869 1018 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Clacu01g1869 1018 Gene3D Ribonuclease Inhibitor 375 615 IPR032675 -
Clacu01g1869 1018 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Clacu01g1869 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Clacu01g1869 1018 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Clacu01g1869 1018 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1869 1018 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 963 IPR050647 -
Clacu01g1869 1018 SUPERFAMILY RNI-like 70 391 - -
Clacu01g1869 1018 MobiDBLite consensus disorder prediction 978 992 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1869 Clacu-Chr1:30820162 Clacu10g0808 Clacu-Chr10:13816678 3.10E-21 dispersed
Clacu01g1868 Clacu-Chr1:30804642 Clacu01g1869 Clacu-Chr1:30820162 9.80E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73265 PF07714 PK_Tyr_Ser-Thr 4.20E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1869 - - - 0.0