Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1886 ATGGAGCTCAGTCAACATGGTTTTTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGCAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCTCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGACCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1026 41.52 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGCNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETSPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMDQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30999372 31000697 - ClG42_01g0188600.10 Clacu01g1886 241270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1886 341 SMART finulus 172 221 IPR011598 GO:0046983(InterPro)
Clacu01g1886 341 Pfam Plant bHLH transcription factor, ACT-like domain 259 330 IPR054502 -
Clacu01g1886 341 Pfam Helix-loop-helix DNA-binding domain 173 215 IPR011598 GO:0046983(InterPro)
Clacu01g1886 341 Gene3D - 158 229 IPR036638 GO:0046983(InterPro)
Clacu01g1886 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983(InterPro)
Clacu01g1886 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983(InterPro)
Clacu01g1886 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 336 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1886 Clacu-Chr1:30999372 Clacu03g0397 Clacu-Chr3:4434537 3.50E-33 dispersed
Clacu02g0428 Clacu-Chr2:3855260 Clacu01g1886 Clacu-Chr1:30999372 2.30E-17 transposed
Clacu01g1886 Clacu-Chr1:30999372 Clacu11g1668 Clacu-Chr11:27894256 1.50E-68 wgd
Clacu01g1886 Clacu-Chr1:30999372 Clacu08g1345 Clacu-Chr8:23465148 3.40E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47068 PF00010 HLH 2.10E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1886 - - - 0.0