Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1892 ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGATGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAAATAGAGCTTTCCTTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGATGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAATGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCGAGACAAGGCCCAACTTTGTGGGAGATTGGTATCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAGCCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGAATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGAATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGCAGAAGATGAAAACATAATCTATCTTACACAAAGAAGACATACGGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA 2082 45.53 MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGIPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWNRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTEYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLAEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31065805 31070028 + ClG42_01g0189200.10 Clacu01g1892 241276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1892 693 CDD RGL4_C 497 690 - -
Clacu01g1892 693 Gene3D - 493 689 - -
Clacu01g1892 693 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Clacu01g1892 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Clacu01g1892 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 691 IPR051850 -
Clacu01g1892 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Clacu01g1892 693 CDD RGL4_N 64 348 - -
Clacu01g1892 693 CDD RGL4_M 386 483 IPR029413 -
Clacu01g1892 693 Pfam Polysaccharide lyase family 4, domain III 495 689 IPR029411 -
Clacu01g1892 693 Gene3D - 383 485 - -
Clacu01g1892 693 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
Clacu01g1892 693 Pfam Rhamnogalacturonate lyase family 66 254 IPR010325 -
Clacu01g1892 693 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246(InterPro)
Clacu01g1892 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1892 Clacu-Chr1:31065805 Clacu11g1655 Clacu-Chr11:27769025 1.70E-220 dispersed
Clacu10g0833 Clacu-Chr10:15118865 Clacu01g1892 Clacu-Chr1:31065805 1.30E-213 transposed
Clacu01g1892 Clacu-Chr1:31065805 Clacu11g1654 Clacu-Chr11:27746002 6.20E-207 wgd
Clacu01g1892 Clacu-Chr1:31065805 Clacu08g1310 Clacu-Chr8:23054904 5.30E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1892 K18195 - csv:101206696 1127.08