Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1893 ATGGGGAAATCACCGGCGGAAGAGCATCCTAAGAAGGCTTTTGGATGGGCTGCCTCAGATACCTCCGGCCTTCTTTCTCCATTTCATTTCTCCAGAAGAGAAACAGGGGAAAATGATGTAGCTTTTAAAGTTCTTTACTGTGGAATTTGCCATTCTGACCTTCACATGGTGAAGAATGAGTGGGGAACTACCATTTACCCTATCGTTCCTGGTCATGAAATCGTGGGCGAGGTAACAGAGGTTGGAAGCAAAGTAAAGAACTTCAAGGTCGGAGACAAAGTTGGCGTAGGATGTATGGTTCAATCCTGCCGCTCCTGTGATAACTGTTCCAACGACCTCGAGAACTATTGCCCCAAAATGATCCTCACCTACTCCGCCAAGAACACTGACGGGACCATAACCTACGGAGGATACTCCGACTGTATGGTCGCTGACGAGCATTTCATTGTTCGCATTCCCGATGGCATCCCTCTACATGCTGGGGCTCCCCTGCTGTGCGCTGGTATCACAGTTTACAGCCCCTTGAGATACTTTGGACTTGACAAGCCTGGAATGCACATCGGCGTGGTTGGCCTCGGTGGGCTTGGCCACGTTGCCGTCAAATTTGCTAAGGCCTTCGGCGCTAAGGTTACTGTGATTAGTACCTCGCCTAATAAGAAGCAGGAGGCTATTGAACATCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAATTGCAGGCTGCTAGGGGGACTTTGGATGGTATCATAGACACAGTCTCTGCTGCACATCCCCTTCTTCCTCTGCTGTCGCTTGTAAAAACGCATGGAAAATTTGTTATGGTTGGAGCACCAGAGAAGCCACTTGAGCTCCCGGCCTTTGCTCTTATTGGGGGTAGGAAAACAATGGCCGGTAGTTGCATTGGAGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATTACGGCAGATGTCGAGGTGATTCCAATGGCAGACGTCAACAAGGCAATGGAACGAATGCTGAAACAGGATGTCAAGTATCGGTTCGTCATCGACATTGCCAACTCATTGAAGCCGTAG 1080 49.07 MGKSPAEEHPKKAFGWAASDTSGLLSPFHFSRRETGENDVAFKVLYCGICHSDLHMVKNEWGTTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVQSCRSCDNCSNDLENYCPKMILTYSAKNTDGTITYGGYSDCMVADEHFIVRIPDGIPLHAGAPLLCAGITVYSPLRYFGLDKPGMHIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKQEAIEHLGADSFLVSRDQEQLQAARGTLDGIIDTVSAAHPLLPLLSLVKTHGKFVMVGAPEKPLELPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEVIPMADVNKAMERMLKQDVKYRFVIDIANSLKP 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31070339 31072709 - ClG42_01g0189300.10 Clacu01g1893 241277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1893 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Clacu01g1893 359 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
Clacu01g1893 359 Gene3D - 167 323 - -
Clacu01g1893 359 SUPERFAMILY GroES-like 22 184 IPR011032 -
Clacu01g1893 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Clacu01g1893 359 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Clacu01g1893 359 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Clacu01g1893 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Clacu01g1893 359 Gene3D - 16 353 - -
Clacu01g1893 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Clacu01g1893 359 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Clacu01g1893 359 FunFam Uncharacterized protein 16 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1893 Clacu-Chr1:31070339 Clacu02g0081 Clacu-Chr2:834967 2.10E-150 dispersed
Clacu01g1893 Clacu-Chr1:31070339 Clacu05g1190 Clacu-Chr5:10977744 4.50E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1893 K23232 - csv:101222715 682.945