Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1896 ATGCATCAAAAACCCACCGGAAGAACTAAGAAGGCCCAAGAATCTAATAAAATATCCAATCATCCACTTTCAATAGAGTGCGTGCAAAACACCGGCCAATCATCAAGCTCCACAATGATTGTCTTCTACTTGTTTTCAACACGCGACCCCACCAATCGCGTGAGACTGGGTGCACATATGAGCTTCTTTGTCTCCTCAGGTTTAATTGTTACTATCTGTAATATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAGAAGATGCAACCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGCGTGTACCGTAATAGGCGTAAGATTGATGAGAGTCCACGCAAAAGGAAAGCTAGCTCGCGCCTGATAAATTGCCCGTTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCTGTTTTACTGAGGATGAAGTAAAGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATTTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCGAAAATTCGCCAAGGAAATCTATCAGAAAAGAATTTCAAGTCATGGAGACCTAATATTTCAGTTCCTACAAATAGTAGTCATACTGTCATTGGGGATTCAGTCAAGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCGATTTCTACTCGTCAATGTGTTATGTTCAAGTTTCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACTAATATTGTCACAGAACAAGGAAAAACATTAAGGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAATGCAACTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGATTGCAGTTACTTGTGGCAATACATTTGTTCTTAAGCCATGTGAAATGCACCCGGGGGCTTCAATGTTGCTTGCTGCATTAGCAGTTGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGTGATGATGAAGACATAAAAGCCATATCTTTTTCCAGTTCAAGTTCAGTTGGAAAGAACATATATGCTAGGGCTGCTACTACAGGAAAGCAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTTGGTACTGCTGGGCGGACATGTTTGGCTATCGACATCGTTGTCTCCGTTGGGAGTTCAATTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCAAAAGCTGACCTTGGTCCTGTAATTACCAAACAGGTGAAAGATCGATTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCCAGACTTTTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGATGTGGAAGTGGGAATGGTTGGTACCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGACTGGAGTTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGAGTGTCAATGGCGCTGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGTACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGGATGCAGCACAAAAGTTTACCCCCATTGCCTTCCACATCTGAGAGGGACTCACCTGGTGTCGCTGTACTGCTGCCGAACTCTCGAATATCTCAGACAGGTTTAACCAATGAAAGAGCCACCTCCTCTCCGCCGACTCCTGATAGGGATTTGCACGGTCAGGGACTTTCCCTGATTTCTACCTTGTCATCAGAGGGGGACGTATCCAACCAAGATTTGTCTCCTGCTATGCTTTCAGCAGGTGATAGAGATTTACCTGGTCAAGCTGTGTCAGTGGCAACATCCCAATCATCTGAGCGACTGTATATACCTCAGAAATCTCATTGGAACGCAACCCTGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGCCCTCATCGCACACAAACAACATCAAAGGGCAGGCATCTCGAACAACTCATCCTGCTTTGGTCTTAGCTGCAGAGGGGTTATATGTGCCAACATCTCATGACAGTATTTGTCTCATTAACCATAGAAATGATAGTACGGTTCCATCTCGAAGAATTGACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACAACACTATGAGTCGAACATTGCAGAGAACTGATACCTCCTTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCTCTTCTGATGGAAATGACCACATCAGCTTAGCTTCTCATACCGACGTTGCATTGCAATCAACCTCAGATAGAATGTACTTGTCTAGCTTGTCCGAGAGGAACGATAATATGGCTTCCGCTGCTTCTGAACAAGCCGAATCTTTAACATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAATGCCGGTATGGCACCAAAATCGGAATGGCTATGCATTCCCGCACCTGCTGGATCTCAGAGAATGTACCCACAAGGTCCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGGAGCATCATTAACATTGCCTGCATCACAAAGAATGTAA 3366 43.08 MHQKPTGRTKKAQESNKISNHPLSIECVQNTGQSSSSTMIVFYLFSTRDPTNRVRLGAHMSFFVSSGLIVTICNMGTQGQTGLVAQKKMQPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRCFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSSHTVIGDSVKQNHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLRDAQDDIICGLEVVKHACGLATMQMGEFIPNATDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCEMHPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFSSSSSVGKNIYARAATTGKQVQSHFGGKSHAIIMPDANMEATLSALVDAGFGTAGRTCLAIDIVVSVGSSILWEEKLVECAKALKVNVGTDPKADLGPVITKQVKDRFCKLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQADNLEEAISIVNRNKNRNGASIFTTSGIYARKFQSDVEVGMVGTNVAVTVPLPSSFNDKAGLEFYTQLKRVAQQWKNSPSIGVSMALPSPSERHLRSRAVPSMLVSTSEKDSPGMQHKSLPPLPSTSERDSPGVAVLLPNSRISQTGLTNERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNQDLSPAMLSAGDRDLPGQAVSVATSQSSERLYIPQKSHWNATLRADSIPSSSERIHAPSSHTNNIKGQASRTTHPALVLAAEGLYVPTSHDSICLINHRNDSTVPSRRIDSMCQSSERVYMLATSHLNNTMSRTLQRTDTSLFSSSERHYVPPSSDGNDHISLASHTDVALQSTSDRMYLSSLSERNDNMASAASEQAESLTSTSERMYIPPLVHRNAGMAPKSEWLCIPAPAGSQRMYPQGPIVSADEFQSQGASLTLPASQRM 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31088343 31099989 + ClG42_01g0189600.10 Clacu01g1896 241280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1896 1121 CDD ALDH_F6_MMSDH 286 748 IPR010061 GO:0004491(InterPro)
Clacu01g1896 1121 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 531 725 IPR016163 GO:0016620(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 776 840 - -
Clacu01g1896 1121 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 288 748 IPR010061 GO:0004491(InterPro)
Clacu01g1896 1121 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 305 530 IPR016162 GO:0016491(InterPro)
Clacu01g1896 1121 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 89 762 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Clacu01g1896 1121 SUPERFAMILY ALDH-like 279 750 IPR016161 GO:0016491(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 776 799 - -
Clacu01g1896 1121 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 531 730 - -
Clacu01g1896 1121 Pfam Aldehyde dehydrogenase family 297 725 IPR015590 GO:0016491(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 1 22 - -
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 811 834 - -
Clacu01g1896 1121 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 290 537 - -
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 907 926 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1896 K00140 - - csv:101207178 1897.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1896 Clacu-Chr1:31088343 Clacu09g1690 Clacu-Chr9:30345801 1.10E-192 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1094 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Clacu02g1708 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Clacu06g1798 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Clacu06g1798 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Clacu02g1708 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.2e-247 849.7
Clacu06g1094 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Clacu02g1708 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.1e-170 594.0
Clacu06g1798 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 5.9e-165 577.4
Clacu06g1094 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Clacu11g1761 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.6e-181 632.9
Clacu11g1762 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.2e-177 617.8
Clacu11g1762 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Clacu11g1761 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 3.5e-176 614.8
Clacu02g2374 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Clacu07g0896 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.8e-184 640.6
Clacu02g2374 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Clacu02g1921 . 37 694 Aldehyde Dehydrogenase Gene Family AT1G79440 57.4 1.1e-203 706.4
Clacu09g1690 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.8e-240 827.4
Clacu01g1896 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Clacu06g1775 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.8e-252 866.3
Clacu06g1775 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Clacu02g1749 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Clacu01g1519 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 7.9e-261 896.3
Clacu06g0444 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32