Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1896 ATGCATCAAAAACCCACCGGAAGAACTAAGAAGGCCCAAGAATCTAATAAAATATCCAATCATCCACTTTCAATAGAGTGCGTGCAAAACACCGGCCAATCATCAAGCTCCACAATGATTGTCTTCTACTTGTTTTCAACACGCGACCCCACCAATCGCGTGAGACTGGGTGCACATATGAGCTTCTTTGTCTCCTCAGGTTTAATTGTTACTATCTGTAATATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAGAAGATGCAACCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGCGTGTACCGTAATAGGCGTAAGATTGATGAGAGTCCACGCAAAAGGAAAGCTAGCTCGCGCCTGATAAATTGCCCGTTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCTGTTTTACTGAGGATGAAGTAAAGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATTTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCGAAAATTCGCCAAGGAAATCTATCAGAAAAGAATTTCAAGTCATGGAGACCTAATATTTCAGTTCCTACAAATAGTAGTCATACTGTCATTGGGGATTCAGTCAAGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCGATTTCTACTCGTCAATGTGTTATGTTCAAGTTTCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACTAATATTGTCACAGAACAAGGAAAAACATTAAGGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAATGCAACTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGATTGCAGTTACTTGTGGCAATACATTTGTTCTTAAGCCATGTGAAATGCACCCGGGGGCTTCAATGTTGCTTGCTGCATTAGCAGTTGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGTGATGATGAAGACATAAAAGCCATATCTTTTTCCAGTTCAAGTTCAGTTGGAAAGAACATATATGCTAGGGCTGCTACTACAGGAAAGCAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTTGGTACTGCTGGGCGGACATGTTTGGCTATCGACATCGTTGTCTCCGTTGGGAGTTCAATTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCAAAAGCTGACCTTGGTCCTGTAATTACCAAACAGGTGAAAGATCGATTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCCAGACTTTTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGATGTGGAAGTGGGAATGGTTGGTACCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGACTGGAGTTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGAGTGTCAATGGCGCTGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGTACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGGATGCAGCACAAAAGTTTACCCCCATTGCCTTCCACATCTGAGAGGGACTCACCTGGTGTCGCTGTACTGCTGCCGAACTCTCGAATATCTCAGACAGGTTTAACCAATGAAAGAGCCACCTCCTCTCCGCCGACTCCTGATAGGGATTTGCACGGTCAGGGACTTTCCCTGATTTCTACCTTGTCATCAGAGGGGGACGTATCCAACCAAGATTTGTCTCCTGCTATGCTTTCAGCAGGTGATAGAGATTTACCTGGTCAAGCTGTGTCAGTGGCAACATCCCAATCATCTGAGCGACTGTATATACCTCAGAAATCTCATTGGAACGCAACCCTGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGCCCTCATCGCACACAAACAACATCAAAGGGCAGGCATCTCGAACAACTCATCCTGCTTTGGTCTTAGCTGCAGAGGGGTTATATGTGCCAACATCTCATGACAGTATTTGTCTCATTAACCATAGAAATGATAGTACGGTTCCATCTCGAAGAATTGACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACAACACTATGAGTCGAACATTGCAGAGAACTGATACCTCCTTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCTCTTCTGATGGAAATGACCACATCAGCTTAGCTTCTCATACCGACGTTGCATTGCAATCAACCTCAGATAGAATGTACTTGTCTAGCTTGTCCGAGAGGAACGATAATATGGCTTCCGCTGCTTCTGAACAAGCCGAATCTTTAACATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAATGCCGGTATGGCACCAAAATCGGAATGGCTATGCATTCCCGCACCTGCTGGATCTCAGAGAATGTACCCACAAGGTCCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGGAGCATCATTAACATTGCCTGCATCACAAAGAATGTAA 3366 43.08 MHQKPTGRTKKAQESNKISNHPLSIECVQNTGQSSSSTMIVFYLFSTRDPTNRVRLGAHMSFFVSSGLIVTICNMGTQGQTGLVAQKKMQPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRCFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSSHTVIGDSVKQNHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLRDAQDDIICGLEVVKHACGLATMQMGEFIPNATDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCEMHPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFSSSSSVGKNIYARAATTGKQVQSHFGGKSHAIIMPDANMEATLSALVDAGFGTAGRTCLAIDIVVSVGSSILWEEKLVECAKALKVNVGTDPKADLGPVITKQVKDRFCKLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQADNLEEAISIVNRNKNRNGASIFTTSGIYARKFQSDVEVGMVGTNVAVTVPLPSSFNDKAGLEFYTQLKRVAQQWKNSPSIGVSMALPSPSERHLRSRAVPSMLVSTSEKDSPGMQHKSLPPLPSTSERDSPGVAVLLPNSRISQTGLTNERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNQDLSPAMLSAGDRDLPGQAVSVATSQSSERLYIPQKSHWNATLRADSIPSSSERIHAPSSHTNNIKGQASRTTHPALVLAAEGLYVPTSHDSICLINHRNDSTVPSRRIDSMCQSSERVYMLATSHLNNTMSRTLQRTDTSLFSSSERHYVPPSSDGNDHISLASHTDVALQSTSDRMYLSSLSERNDNMASAASEQAESLTSTSERMYIPPLVHRNAGMAPKSEWLCIPAPAGSQRMYPQGPIVSADEFQSQGASLTLPASQRM 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31088343 31099989 + ClG42_01g0189600.10 Clacu01g1896 241280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1896 1121 CDD ALDH_F6_MMSDH 286 748 IPR010061 GO:0004491(InterPro)
Clacu01g1896 1121 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 531 725 IPR016163 GO:0016620(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 776 840 - -
Clacu01g1896 1121 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 288 748 IPR010061 GO:0004491(InterPro)
Clacu01g1896 1121 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 305 530 IPR016162 GO:0016491(InterPro)
Clacu01g1896 1121 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 89 762 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Clacu01g1896 1121 SUPERFAMILY ALDH-like 279 750 IPR016161 GO:0016491(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 776 799 - -
Clacu01g1896 1121 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 531 730 - -
Clacu01g1896 1121 Pfam Aldehyde dehydrogenase family 297 725 IPR015590 GO:0016491(InterPro)
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 1 22 - -
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 811 834 - -
Clacu01g1896 1121 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 290 537 - -
Clacu01g1896 1121 MobiDBLite consensus disorder prediction 907 926 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1896 Clacu-Chr1:31088343 Clacu09g1690 Clacu-Chr9:30345801 1.10E-192 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1896 K00140 - csv:101207178 1897.09