Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g1915 | ATGGCTGATAGTTTCTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTAATTTTACTGTAAAAGAAGCAGAGGAAGAAGAATATGAATATGAAAGAGAGGAGGAGATGAGTGCTGTGGTGTGTGTGTTTTTGCAAAACAGTGGAGAGGTTCAGGTTTCAGCTGGCATTCCCATTTGTGAAGGGAAAGCCATGAATTTCCTTTAA | 1242 | 39.53 | MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPNFTVKEAEEEEYEYEREEEMSAVVCVFLQNSGEVQVSAGIPICEGKAMNFL | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31254027 | 31256710 | + | ClG42_01g0191500.10 | Clacu01g1915 | 241299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g1915 | 413 | CDD | CYCLIN_AtCycD-like_rpt1 | 94 | 191 | - | - | |
Clacu01g1915 | 413 | FunFam | D6-type cyclin | 190 | 281 | - | - | |
Clacu01g1915 | 413 | PANTHER | CYCLINS | 62 | 262 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Clacu01g1915 | 413 | FunFam | D2/4-type cyclin | 77 | 189 | - | - | |
Clacu01g1915 | 413 | Pfam | Cyclin, N-terminal domain | 65 | 193 | IPR006671 | - | |
Clacu01g1915 | 413 | SMART | Cyclin_C_2 | 196 | 307 | IPR004367 | - | |
Clacu01g1915 | 413 | CDD | CYCLIN_AtCycD-like_rpt2 | 196 | 283 | - | - | |
Clacu01g1915 | 413 | Gene3D | - | 65 | 282 | - | - | |
Clacu01g1915 | 413 | SUPERFAMILY | Cyclin-like | 178 | 306 | IPR036915 | - | |
Clacu01g1915 | 413 | MobiDBLite | consensus disorder prediction | 329 | 371 | - | - | |
Clacu01g1915 | 413 | Pfam | Cyclin, C-terminal domain | 196 | 287 | IPR004367 | - | |
Clacu01g1915 | 413 | SMART | cyclin_7 | 99 | 187 | IPR013763 | - | |
Clacu01g1915 | 413 | SUPERFAMILY | Cyclin-like | 59 | 193 | IPR036915 | - | |
Clacu01g1915 | 413 | ProSitePatterns | Cyclins signature. | 94 | 125 | IPR048258 | - | |
Clacu01g1915 | 413 | Gene3D | - | 77 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1776 | Clacu-Chr1:29953695 | Clacu01g1915 | Clacu-Chr1:31254027 | 5.60E-36 | dispersed | |
Clacu01g1915 | Clacu-Chr1:31254027 | Clacu09g2091 | Clacu-Chr9:35717818 | 3.30E-46 | dispersed | |
Clacu02g1186 | Clacu-Chr2:23924100 | Clacu01g1915 | Clacu-Chr1:31254027 | 9.20E-33 | transposed | |
Clacu04g0851 | Clacu-Chr4:22852176 | Clacu01g1915 | Clacu-Chr1:31254027 | 2.30E-22 | transposed | |
Clacu10g1013 | Clacu-Chr10:21768793 | Clacu01g1915 | Clacu-Chr1:31254027 | 7.10E-55 | transposed | |
Clacu01g1915 | Clacu-Chr1:31254027 | Clacu08g1308 | Clacu-Chr8:23029273 | 1.90E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g1915 | K18810 | - | csv:101209378 | 583.563 |