Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1915 ATGGCTGATAGTTTCTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTAATTTTACTGTAAAAGAAGCAGAGGAAGAAGAATATGAATATGAAAGAGAGGAGGAGATGAGTGCTGTGGTGTGTGTGTTTTTGCAAAACAGTGGAGAGGTTCAGGTTTCAGCTGGCATTCCCATTTGTGAAGGGAAAGCCATGAATTTCCTTTAA 1242 39.53 MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPNFTVKEAEEEEYEYEREEEMSAVVCVFLQNSGEVQVSAGIPICEGKAMNFL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31254027 31256710 + ClG42_01g0191500.10 Clacu01g1915 241299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1915 413 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
Clacu01g1915 413 FunFam D6-type cyclin 190 281 - -
Clacu01g1915 413 PANTHER CYCLINS 62 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu01g1915 413 FunFam D2/4-type cyclin 77 189 - -
Clacu01g1915 413 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Clacu01g1915 413 SMART Cyclin_C_2 196 307 IPR004367 -
Clacu01g1915 413 CDD CYCLIN_AtCycD-like_rpt2 196 283 - -
Clacu01g1915 413 Gene3D - 65 282 - -
Clacu01g1915 413 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
Clacu01g1915 413 MobiDBLite consensus disorder prediction 329 371 - -
Clacu01g1915 413 Pfam Cyclin, C-terminal domain 196 287 IPR004367 -
Clacu01g1915 413 SMART cyclin_7 99 187 IPR013763 -
Clacu01g1915 413 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Clacu01g1915 413 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
Clacu01g1915 413 Gene3D - 77 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1776 Clacu-Chr1:29953695 Clacu01g1915 Clacu-Chr1:31254027 5.60E-36 dispersed
Clacu01g1915 Clacu-Chr1:31254027 Clacu09g2091 Clacu-Chr9:35717818 3.30E-46 dispersed
Clacu02g1186 Clacu-Chr2:23924100 Clacu01g1915 Clacu-Chr1:31254027 9.20E-33 transposed
Clacu04g0851 Clacu-Chr4:22852176 Clacu01g1915 Clacu-Chr1:31254027 2.30E-22 transposed
Clacu10g1013 Clacu-Chr10:21768793 Clacu01g1915 Clacu-Chr1:31254027 7.10E-55 transposed
Clacu01g1915 Clacu-Chr1:31254027 Clacu08g1308 Clacu-Chr8:23029273 1.90E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1915 K18810 - csv:101209378 583.563