Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1917 ATGGAGATGGCGGCAGCGAGTTACGACTCCCTGCCCAACTCAGGTGGCCGACTCAAAATCCCGACTAGTACGGACCAAATGATTTCAAGTACTGGACAGAGGAAACCCAAATACAGAGAGTGTTTGAAAAATCACGCAGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTCGCCGCGGGTGCTGAAGGCACACTCGACGCTCTTAAATGCGCCGCTTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGACAGCCTCAACCCGGCCGTAGGCGTCGGACTTGGAATCGGAGAGCCATTTCTATTGCCACACCCAGGGCAGTTTTCACCTTACTACCGGACTCCAGCTGGGTACCTCCACGTGGCGCCACACCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAGGAGCAGGAGGATATGTCGAATCCCAGCGGCGGAGGCGGTGGAGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGGACGAAGTTTACTCAAGAACAGAAGGACAGAATGCTGGGGCTGGCGGAGACACTGGGTTGGAGGATTCAAAAACACGATGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTGAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAA 702 55.41 MEMAAASYDSLPNSGGRLKIPTSTDQMISSTGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31270011 31270712 - ClG42_01g0191700.10 Clacu01g1917 241301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1917 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Clacu01g1917 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Clacu01g1917 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Clacu01g1917 233 MobiDBLite consensus disorder prediction 132 170 - -
Clacu01g1917 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 37 87 IPR006456 -
Clacu01g1917 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 229 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu01g1917 233 FunFam Zinc-finger homeodomain protein 2 163 231 - -
Clacu01g1917 233 Pfam ZF-HD protein dimerisation region 37 88 IPR006456 -
Clacu01g1917 233 Gene3D - 156 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1917 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1917 Clacu-Chr1:31270011 Clacu11g0158 Clacu-Chr11:1184217 4.90E-47 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu01g1917 Clacu-Chr1:31270011 3.40E-41 transposed
Clacu01g1917 Clacu-Chr1:31270011 Clacu08g1304 Clacu-Chr8:22955505 3.00E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Clacu08g1304 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 1.0e-49 193.7
Clacu01g1917 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Clacu10g0865 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.8e-41 166.4
Clacu09g1867 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Clacu10g1493 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Clacu01g2019 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Clacu08g1304 . 55 246 ZF-HD Transcription Factor Family AT5G65410 51.2 2.5e-45 179.5
Clacu05g2632 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 7.9e-48 187.6
Clacu09g1867 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Clacu10g1493 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.8e-51 198.7
Clacu09g1867 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.0e-51 198.4
Clacu11g0158 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 8.6e-55 211.1
Clacu10g1493 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Clacu09g1867 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47073 PF04770 ZF-HD_dimer 9.20E-29 No_clan Clacu TF