Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g1917 | ATGGAGATGGCGGCAGCGAGTTACGACTCCCTGCCCAACTCAGGTGGCCGACTCAAAATCCCGACTAGTACGGACCAAATGATTTCAAGTACTGGACAGAGGAAACCCAAATACAGAGAGTGTTTGAAAAATCACGCAGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTCGCCGCGGGTGCTGAAGGCACACTCGACGCTCTTAAATGCGCCGCTTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGACAGCCTCAACCCGGCCGTAGGCGTCGGACTTGGAATCGGAGAGCCATTTCTATTGCCACACCCAGGGCAGTTTTCACCTTACTACCGGACTCCAGCTGGGTACCTCCACGTGGCGCCACACCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAGGAGCAGGAGGATATGTCGAATCCCAGCGGCGGAGGCGGTGGAGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGGACGAAGTTTACTCAAGAACAGAAGGACAGAATGCTGGGGCTGGCGGAGACACTGGGTTGGAGGATTCAAAAACACGATGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTGAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAA | 702 | 55.41 | MEMAAASYDSLPNSGGRLKIPTSTDQMISSTGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31270011 | 31270712 | - | ClG42_01g0191700.10 | Clacu01g1917 | 241301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g1917 | 233 | SUPERFAMILY | Homeodomain-like | 157 | 231 | IPR009057 | - | |
Clacu01g1917 | 233 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 38 | 87 | IPR006456 | - | |
Clacu01g1917 | 233 | NCBIfam | homeobox domain, ZF-HD class | 170 | 226 | IPR006455 | - | |
Clacu01g1917 | 233 | MobiDBLite | consensus disorder prediction | 132 | 170 | - | - | |
Clacu01g1917 | 233 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 37 | 87 | IPR006456 | - | |
Clacu01g1917 | 233 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 31 | 229 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Clacu01g1917 | 233 | FunFam | Zinc-finger homeodomain protein 2 | 163 | 231 | - | - | |
Clacu01g1917 | 233 | Pfam | ZF-HD protein dimerisation region | 37 | 88 | IPR006456 | - | |
Clacu01g1917 | 233 | Gene3D | - | 156 | 231 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1917 | Clacu-Chr1:31270011 | Clacu11g0158 | Clacu-Chr11:1184217 | 4.90E-47 | dispersed | |
Clacu10g0865 | Clacu-Chr10:17950168 | Clacu01g1917 | Clacu-Chr1:31270011 | 3.40E-41 | transposed | |
Clacu01g1917 | Clacu-Chr1:31270011 | Clacu08g1304 | Clacu-Chr8:22955505 | 3.00E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47073 | PF04770 | ZF-HD_dimer | 9.20E-29 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g1917 | - | - | - | 0.0 |