Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1917 ATGGAGATGGCGGCAGCGAGTTACGACTCCCTGCCCAACTCAGGTGGCCGACTCAAAATCCCGACTAGTACGGACCAAATGATTTCAAGTACTGGACAGAGGAAACCCAAATACAGAGAGTGTTTGAAAAATCACGCAGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTCGCCGCGGGTGCTGAAGGCACACTCGACGCTCTTAAATGCGCCGCTTGCAACTGCCACCGCAACTTCCACCGCAAGGAAACCGACAGCCTCAACCCGGCCGTAGGCGTCGGACTTGGAATCGGAGAGCCATTTCTATTGCCACACCCAGGGCAGTTTTCACCTTACTACCGGACTCCAGCTGGGTACCTCCACGTGGCGCCACACCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAGGAGCAGGAGGATATGTCGAATCCCAGCGGCGGAGGCGGTGGAGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGGACGAAGTTTACTCAAGAACAGAAGGACAGAATGCTGGGGCTGGCGGAGACACTGGGTTGGAGGATTCAAAAACACGATGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTGAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAA 702 55.41 MEMAAASYDSLPNSGGRLKIPTSTDQMISSTGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31270011 31270712 - ClG42_01g0191700.10 Clacu01g1917 241301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1917 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Clacu01g1917 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 38 87 IPR006456 -
Clacu01g1917 233 NCBIfam homeobox domain, ZF-HD class 170 226 IPR006455 -
Clacu01g1917 233 MobiDBLite consensus disorder prediction 132 170 - -
Clacu01g1917 233 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 37 87 IPR006456 -
Clacu01g1917 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 229 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu01g1917 233 FunFam Zinc-finger homeodomain protein 2 163 231 - -
Clacu01g1917 233 Pfam ZF-HD protein dimerisation region 37 88 IPR006456 -
Clacu01g1917 233 Gene3D - 156 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1917 Clacu-Chr1:31270011 Clacu11g0158 Clacu-Chr11:1184217 4.90E-47 dispersed
Clacu10g0865 Clacu-Chr10:17950168 Clacu01g1917 Clacu-Chr1:31270011 3.40E-41 transposed
Clacu01g1917 Clacu-Chr1:31270011 Clacu08g1304 Clacu-Chr8:22955505 3.00E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47073 PF04770 ZF-HD_dimer 9.20E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1917 - - - 0.0