Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1959 ATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCCTCTTCTTCTCCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCCAGTCCCAATATCGTAACTTCCTTGCCCCTAAATCCTTCACCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTATACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTGAAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCGTCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1047 45.56 MAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSPSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSFQSQYRNFLAPKSFTMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLKAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31628371 31629417 - ClG42_01g0195900.10 Clacu01g1959 241343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1959 348 CDD AP2 155 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 Pfam AP2 domain 156 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 SMART rav1_2 156 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Clacu01g1959 348 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 ProSiteProfiles AP2/ERF domain profile. 156 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 MobiDBLite consensus disorder prediction 279 307 - -
Clacu01g1959 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 341 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu01g1959 348 MobiDBLite consensus disorder prediction 34 62 - -
Clacu01g1959 348 FunFam Ethylene-responsive transcription factor 2 155 214 - -
Clacu01g1959 348 PRINTS Ethylene responsive element binding protein signature 179 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1959 348 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1959 Clacu-Chr1:31628371 Clacu11g1719 Clacu-Chr11:28458610 4.40E-60 dispersed
Clacu01g1959 Clacu-Chr1:31628371 Clacu08g1380 Clacu-Chr8:23857461 2.50E-16 wgd
Clacu01g1959 Clacu-Chr1:31628371 Clacu08g1252 Clacu-Chr8:22508657 4.70E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47078 PF00847 AP2 7.90E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1959 K09286 - csv:101211347 539.65