Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1977 ATGGCGGGTCAACCGTCTGATTCTTCCCCTCTTATTCCACCGGCGCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGAACGTCAAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCACACTGTAGCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTCCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTCATTGCTTCTCTGGGATATTTGACATATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTTGATAGCAAAATTAGTTTTTATTACATATGCGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTACCTGGCACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCGTTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTCGCGAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 972 44.03 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCSTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFIDGCQHYWLRLTWGFDSKISFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31752316 31756771 - ClG42_01g0197700.10 Clacu01g1977 241361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1977 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Clacu01g1977 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Clacu01g1977 323 SUPERFAMILY RING/U-box 31 87 - -
Clacu01g1977 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Clacu01g1977 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Clacu01g1977 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Clacu01g1977 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1977 Clacu-Chr1:31752316 Clacu06g1154 Clacu-Chr6:21950169 9.80E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1977 - - - 0.0