Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1993 ATGTCCATATCACCCCAAGCAAAGGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGAAGCGAGAGAGAATGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAAATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTACCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 1161 49.35 MSISPQAKEESKSAVPCEEVQQRTRSSREVSLVEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31866694 31869323 + ClG42_01g0199300.10 Clacu01g1993 241377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1993 386 MobiDBLite consensus disorder prediction 62 91 - -
Clacu01g1993 386 MobiDBLite consensus disorder prediction 1 47 - -
Clacu01g1993 386 MobiDBLite consensus disorder prediction 222 238 - -
Clacu01g1993 386 MobiDBLite consensus disorder prediction 77 91 - -
Clacu01g1993 386 Pfam BES1/BZR1 plant transcription factor, N-terminal 73 196 IPR008540 -
Clacu01g1993 386 MobiDBLite consensus disorder prediction 222 246 - -
Clacu01g1993 386 MobiDBLite consensus disorder prediction 12 47 - -
Clacu01g1993 386 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 73 385 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1993 K14503 - - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0742 Clacu-Chr3:8227563 Clacu01g1993 Clacu-Chr1:31866694 1.20E-54 transposed
Clacu07g1014 Clacu-Chr7:24570088 Clacu01g1993 Clacu-Chr1:31866694 1.70E-50 transposed
Clacu01g1993 Clacu-Chr1:31866694 Clacu08g1689 Clacu-Chr8:26508723 1.20E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1689 . 1 310 BZR Transcription Factor Family AT1G75080 60.6 1.4e-87 320.1
Clacu01g1993 . 95 386 BZR Transcription Factor Family AT1G75080 59.2 1.3e-80 297.0
Clacu08g1689 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 7.7e-86 314.3
Clacu01g1993 . 95 384 BZR Transcription Factor Family AT1G19350 59.5 4.5e-78 288.5
Clacu01g1993 . 73 386 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Clacu08g1689 . 1 305 BZR Transcription Factor Family AT3G50750 50.5 3.5e-60 228.8
Clacu07g1014 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 9.5e-50 193.7
Clacu03g0742 . 80 327 BZR Transcription Factor Family AT4G18890 51.4 2.6e-47 185.7
Clacu07g1014 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 2.8e-117 418.7
Clacu03g0742 . 1 327 BZR Transcription Factor Family AT1G78700 67.8 2.3e-103 372.5
Clacu01g1993 . 95 267 BZR Transcription Factor Family AT4G36780 79.1 3.9e-64 241.9
Clacu08g1689 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 1.7e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47079 PF05687 BES1_N 2.60E-64 No_clan Clacu TF