Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1998 ATGGCGGCCATGAATCTCCGACCCGACGGCGACAATTCACAACTCATTTCCCATCTCTACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGGAATAAGCCGCCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGGGGCGGAGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATAAATTTTGGCAACGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTCCAAAATTCCCATCTTGAATCTGAGTTGGTGAAAGTGAAGGAGCAATTGAAAGAAGCAAAAAATGAAATAAAAAAATTGGGAGAAGGAAGCGAGAGAATTTCAAGCAATAACAGTCCGAGCTCTTCGGTAACAATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATGTAG 663 46.0 MAAMNLRPDGDNSQLISHLYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLEINFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQNSHLESELVKVKEQLKEAKNEIKKLGEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31921185 31923171 + ClG42_01g0199800.10 Clacu01g1998 241382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1998 220 CDD homeodomain 64 118 IPR001356 GO:0003677(InterPro)
Clacu01g1998 220 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Clacu01g1998 220 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu01g1998 220 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Clacu01g1998 220 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Clacu01g1998 220 MobiDBLite consensus disorder prediction 27 64 - -
Clacu01g1998 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Clacu01g1998 220 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Clacu01g1998 220 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Clacu01g1998 220 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Clacu01g1998 220 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Clacu01g1998 220 Coils Coil 109 171 - -
Clacu01g1998 220 Gene3D - 58 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1998 Clacu-Chr1:31921185 Clacu07g0899 Clacu-Chr7:22560695 4.90E-41 dispersed
Clacu01g1998 Clacu-Chr1:31921185 Clacu10g1929 Clacu-Chr10:32910367 1.30E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47080 PF00046 Homeodomain 2.60E-16 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1998 K09338 - csv:101216890 341.658