Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1999 ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCAATGCTTTCATTCCGTTCATTGGGGATGATGATTCTGATGATTTGGGTCCCGAGTTCGTCTTCAACATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATCATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGACCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGCTGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTTGTTTCTGGACTGAATTCAACTTTTTCTTACTTCAGTCTCCCAATCCAACTTTGGTCAATGGGGACTGGGGAAGAGGGCACACCTTCTAAAACTTCCAAACCTCCCTCGTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACCCGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA 2685 47.15 MADHSDEQHSFRTIANAFIPFIGDDDSDDLGPEFVFNIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVFLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLSFIFELNLILGMRNYLRRLVVSGLNSTFSYFSLPIQLWSMGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31926481 31938651 + ClG42_01g0199900.10 Clacu01g1999 241383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1999 894 MobiDBLite consensus disorder prediction 632 698 - -
Clacu01g1999 894 MobiDBLite consensus disorder prediction 530 553 - -
Clacu01g1999 894 SUPERFAMILY Leucine zipper domain 797 853 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 MobiDBLite consensus disorder prediction 322 355 - -
Clacu01g1999 894 FunFam BZIP transcription factor 796 847 - -
Clacu01g1999 894 Pfam bZIP transcription factor 794 856 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 Pfam G-box binding protein MFMR 528 621 IPR012900 -
Clacu01g1999 894 SMART brlzneu 794 858 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 SMART serkin_6 49 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 Gene3D Phosphorylase Kinase; domain 1 38 129 - -
Clacu01g1999 894 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 796 859 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 MobiDBLite consensus disorder prediction 650 698 - -
Clacu01g1999 894 SUPERFAMILY Protein kinase-like (PK-like) 42 319 IPR011009 -
Clacu01g1999 894 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 801 816 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 CDD STKc_MAP3K-like 55 307 - -
Clacu01g1999 894 MobiDBLite consensus disorder prediction 716 747 - -
Clacu01g1999 894 Gene3D - 797 854 - -
Clacu01g1999 894 Coils Coil 807 862 - -
Clacu01g1999 894 MobiDBLite consensus disorder prediction 791 817 - -
Clacu01g1999 894 CDD bZIP_plant_GBF1 799 849 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g1999 894 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 Gene3D Transferase(Phosphotransferase) domain 1 130 352 - -
Clacu01g1999 894 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1999 894 MobiDBLite consensus disorder prediction 872 894 - -
Clacu01g1999 894 PANTHER G-BOX-BINDING FACTOR 3-RELATED 543 882 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1999 Clacu-Chr1:31926481 Clacu10g1370 Clacu-Chr10:26782601 3.10E-81 dispersed
Clacu01g1999 Clacu-Chr1:31926481 Clacu06g1845 Clacu-Chr6:28974531 3.90E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47081 PF07714 PK_Tyr_Ser-Thr 2.50E-53 CL0016 Clacu TF
73269 PF07714 PK_Tyr_Ser-Thr 2.50E-53 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1999 K09060 - csv:101217128 687.567