Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2001 ATGCCAACTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAATCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCAGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGCACTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGTGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCCGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCCACAGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCACAGCAAGAAAGCTTGCCATGGAACCACCACCACCAAAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGGGTAGACGTCGGCATAACAACCCGATCATACGGCGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 50.26 MPTDVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31947302 31949428 - ClG42_01g0200100.10 Clacu01g2001 241385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2001 511 MobiDBLite consensus disorder prediction 185 244 - -
Clacu01g2001 511 MobiDBLite consensus disorder prediction 218 238 - -
Clacu01g2001 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Clacu01g2001 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Clacu01g2001 511 MobiDBLite consensus disorder prediction 1 39 - -
Clacu01g2001 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Clacu01g2001 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Clacu01g2001 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Clacu01g2001 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Clacu01g2001 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Clacu01g2001 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu01g2001 511 SMART c2h2final6 132 152 IPR013087 -
Clacu01g2001 511 SMART c2h2final6 97 127 IPR013087 -
Clacu01g2001 511 SMART c2h2final6 56 78 IPR013087 -
Clacu01g2001 511 MobiDBLite consensus disorder prediction 264 289 - -
Clacu01g2001 511 Gene3D Classic Zinc Finger 36 103 - -
Clacu01g2001 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Clacu01g2001 511 MobiDBLite consensus disorder prediction 1 25 - -
Clacu01g2001 511 MobiDBLite consensus disorder prediction 269 289 - -
Clacu01g2001 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Clacu01g2001 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2001 Clacu-Chr1:31947302 Clacu09g0073 Clacu-Chr9:709407 9.60E-88 dispersed
Clacu01g0683 Clacu-Chr1:7468551 Clacu01g2001 Clacu-Chr1:31947302 4.40E-61 transposed
Clacu02g1062 Clacu-Chr2:18229211 Clacu01g2001 Clacu-Chr1:31947302 1.80E-87 transposed
Clacu04g1340 Clacu-Chr4:27270805 Clacu01g2001 Clacu-Chr1:31947302 2.80E-59 transposed
Clacu09g0733 Clacu-Chr9:6411890 Clacu01g2001 Clacu-Chr1:31947302 3.30E-88 transposed
Clacu01g2001 Clacu-Chr1:31947302 Clacu07g0903 Clacu-Chr7:22721403 2.00E-130 wgd
Clacu01g2001 Clacu-Chr1:31947302 Clacu08g1684 Clacu-Chr8:26474575 5.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47082 PF00096 zf-C2H2 0.0052 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2001 K25869 - csv:101217597 695.271